AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
July 28, 2016 12:55PM
Hi-

The instructions, with some examples, for driving AFNI are here:
[afni.nimh.nih.gov]
and the plugout instructions are:
[afni.nimh.nih.gov]

Looking at the first example in the first file, I think you would want your AFNI commands in the file to look something like:
afni -com 'OPEN_WINDOW A.axialimage'       \
       -com 'SWITCH_UNDERLAY anat'

If you wanted to, you could use the scripts to enter file names on the command line and to pass the file names to the commands, that way having a flexible tool. But if you have consistent names, then you could put static names after the SWITCH_UNDERLAY option.

--pt
Subject Author Posted

How to load a file of AFNI startup driving script?

Zhihao_Li July 28, 2016 11:16AM

Re: How to load a file of AFNI startup driving script?

ptaylor July 28, 2016 12:55PM

Re: How to load a file of AFNI startup driving script?

Zhihao_Li July 28, 2016 01:42PM

Re: How to load a file of AFNI startup driving script?

rick reynolds July 28, 2016 01:34PM

Re: How to load a file of AFNI startup driving script?

Zhihao_Li July 28, 2016 01:58PM

Re: How to load a file of AFNI startup driving script?

rick reynolds July 28, 2016 04:14PM

Re: How to load a file of AFNI startup driving script?

Zhihao_Li July 28, 2016 08:00PM