I am using the data from subject FT provided for tutorial usage, so I don't think that is the problem.

It works fine when I use the proc.FT generated by the "s01.ap.simple", but when I try to generate my own proc.FT using uber_subject it starts not generating the xmatrix or stats files. I have tried setting the uber_subject parameters to exactly what is specified in the "AFNI start to finish" powerpoint tutorial. And I also checked the generated proc.FT script to make sure that the -fout -tout -x1D and -bucket stats.$subj are all there.

Looking through the terminal output I see the following error message:

dyld: Library not loaded: /usr/local/lib/libgomp.1.dylib
Referenced from: /Users/Shared/abin/3dAllineate
Reason: image not found
#**ERROR Could not square a circle (3dAllineate could not align anat to epi)
Traceback (most recent call last):
File "/Users/Shared/abin/align_epi_anat.py", line 3169, in <module>
ps.align_anat2epi(e, a, ps.epi_wt, ps.AlOpt, suff, mcost)
TypeError: 'NoneType' object is not iterable

So it seems that it is encountering something and ending prematurely, but it generates a results folder and tells me that it was a success.

Any idea of what is going on? Also relevant - I am running only epi_r1 and have modified the corresponding timing .txt files so that they only contain the first run.

-Nick