AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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riccardn
August 30, 2016 12:46PM
-------------------------------- general ---------------------------------
architecture: 64bit
system: Darwin
release: 15.4.0
version: Darwin Kernel Version 15.4.0: Fri Feb 26 22:08:05 PST 2016; root:xnu-3248.40.184~3/RELEASE_X86_64
distribution: 10.11.4 x86_64
number of CPUs: 4
apparent login shell: tcsh

--------------------- AFNI and related program tests ---------------------
which afni : /Users/Shared/abin/afni
afni version : Precompiled binary macosx_10.7_Intel_64: Dec 10 2014
which python : /usr/bin/python
python version : 2.7.10
which R :
which tcsh : /bin/tcsh

instances of various programs found in PATH:
afni : 1 (/Users/Shared/abin/afni)
R : 0
python : 1 (/usr/bin/python)

testing ability to start various programs...
afni : success
suma : success
3dSkullStrip : success
uber_subject.py : success
3dAllineate : FAILURE
dyld: Library not loaded: /usr/local/lib/libgomp.1.dylib
Referenced from: /Users/Shared/abin/3dAllineate
Reason: image not found
3dRSFC : success
SurfMesh : success

checking for $HOME files...
.afnirc : missing
.sumarc : missing
.afni/help/all_progs.COMP : missing

------------------------------ python libs -------------------------------
++ module 'PyQt4' found at /usr/local/lib/python2.7/site-packages/PyQt4
++ module loaded: PyQt4

------------------------------- path vars --------------------------------
PATH = /usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/Users/Shared/abin:/Users/Nick/bin:.

PYTHONPATH = /usr/local/lib/python2.7/site-packages/

LD_LIBRARY_PATH =
DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH =

------------------------------ data checks -------------------------------
data dir : found AFNI_data6 under $HOME/work/PSYC571
top history: 16 Oct 2015 [rickr]: added FT_analysis/PPI directory, with PPI scripts
data dir : missing suma_demo
atlas : found TT_N27+tlrc under /Users/Shared/abin

------------------------------ OS specific -------------------------------

---------------------------- general comments ----------------------------
* consider copying AFNI.afnirc to ~/.afnirc
* consider running "suma -update_env" for .sumarc
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Subject Author Posted

problems with uber_subject.py

riccardn August 05, 2016 01:02PM

Re: problems with uber_subject.py

rick reynolds August 05, 2016 03:45PM

Re: problems with uber_subject.py

riccardn August 08, 2016 12:27PM

Re: problems with uber_subject.py

riccardn August 27, 2016 04:05PM

Re: problems with uber_subject.py

rick reynolds August 27, 2016 06:08PM

Re: problems with uber_subject.py

riccardn August 30, 2016 12:46PM