I have been trying to run the proc.FT script produced by uber_subject.py, but my output folder does not contain an xmat.1D file or any stats.* files. When I look inside the proc.FT script, I can see 3dDeconvolve with the settings -fout -tout -x1D X.xmat.1D and also -bucket stats.$subj.
Aren't these commands supposed to create the xmat and stats.* output? Why does my results folder not contain these files?
Thanks,
Nick