afni -ver
Precompiled binary linux_openmp_64: Aug 23 2016 (Version AFNI_16.2.12)

afni_system_check.py -check_all

-------------------------------- general ---------------------------------
architecture: 64bit ELF
system: Linux
release: 2.6.32-504.16.2.el6.x86_64
version: #1 SMP Tue Mar 10 17:01:00 EDT 2015
distribution: Red Hat Enterprise Linux Server 6.4 Santiago
number of CPUs: 20
apparent login shell: bash (current shell is tcsh)
shell RC file: .tcshrc (exists)

--------------------- AFNI and related program tests ---------------------
which afni : /projects/b1033/abin/afni
afni version : Precompiled binary linux_openmp_64: Aug 23 2016
AFNI_version.txt : AFNI_16.2.12, linux_openmp_64, Aug 23 2016
which python : /software/anaconda2/bin/python
python version : 2.7.12
which R : /software/R/3.2.2/bin/R
R version : R version 3.2.2 (2015-08-14) -- "Fire Safety"
which tcsh : /bin/tcsh

instances of various programs found in PATH:
afni : 1 (/projects/b1033/abin/afni)
R : 1 (/hpc/software/R/3.2.2/bin/R)
python : 2
/hpc/software/anaconda2/bin/python2.7
/usr/bin/python

testing ability to start various programs...
afni : success
suma : success
3dSkullStrip : success
uber_subject.py : success
3dAllineate : success
3dRSFC : success
SurfMesh : success

checking for R packages...
rPkgsInstall -pkgs ALL -check : FAILURE

oo Warning:
These packages are not installed on the computer: afex!
These packages are not installed on the computer: phia!


checking for $HOME files...
.afnirc : missing
.sumarc : missing
.afni/help/all_progs.COMP : missing

------------------------------ python libs -------------------------------
++ module 'PyQt4' found at /software/anaconda2/lib/python2.7/site-packages/PyQt4
++ module loaded: PyQt4

-------------------------------- env vars --------------------------------
PATH = /software/R/3.2.2/bin:/software/mpi/openmpi-1.6.3-gcc-4.6.3-trq4/bin:/hpc/software/gcc/4.6.3-rhel6/bin:/software/anaconda2/bin:/usr/lib64/qt-3.3/bin:/opt/moab7/bin:/opt/moab7/sbin:/opt/mam/bin:/opt/mam/sbin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/lpp/mmfs/bin:/opt/ibutils/bin:/opt/torque6/bin:/opt/torque6/sbin:/home/knw051/bin:/projects/b1033/abin:/usr/lpp/mmfs/bin:/opt/torque/bin:/opt/torque/sbin:/projects/b1033/abin

PYTHONPATH =
R_LIBS =
LD_LIBRARY_PATH = /software/mpi/openmpi-1.6.3-gcc-4.6.3-trq4/lib64:/hpc/software/gcc/4.6.3-rhel6/lib:/hpc/software/gcc/4.6.3-rhel6/lib64

DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH =

------------------------------ data checks -------------------------------
data dir : missing AFNI_data6
data dir : missing suma_demo
data dir : missing FATCAT_DEMO
data dir : missing afni_handouts
atlas : found TT_N27+tlrc under /projects/b1033/abin

------------------------------ OS specific -------------------------------
which yum : /usr/bin/yum
yum version : 3.2.29


============================ summary comments ============================
* login shell 'bash', trusting user to translate from 'tcsh'
* missing R packages (see rPkgsInstall)
* consider running: cp /projects/b1033/abin/AFNI.afnirc ~/.afnirc
* consider running "suma -update_env" for .sumarc
* consider running: apsearch -update_all_afni_help
* insufficient data for AFNI bootcamp