AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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September 13, 2016 01:39PM
to my knowledge I haven't resampled/reoriented the data. Here is the orientation info when I 3dinfo my data:
Data Axes Tilt: Plumb
Data Axes Orientation:
first (x) = Anterior-to-Posterior
second (y) = Superior-to-Inferior
third (z) = Left-to-Right [-orient ASL]

Is that what you would expect?

I'm confused about how to determine which slices I want. When the z-value changes in the AFNI window, the cursor moves along the dorsal/ventral axis as seen here: Image 1 Image 2. That's not what I think of as slices-- I would expect the cursor to move in an anterior-posterior direction. It's possible that I'm thinking about this the wrong way, but I'd appreciate your input!
Subject Author Posted

3dmaskave for slices in y direction

mmontchal September 12, 2016 12:36PM

Re: 3dmaskave for slices in y direction

rick reynolds September 13, 2016 12:40AM

Re: 3dmaskave for slices in y direction

mmontchal September 13, 2016 01:39PM

Re: 3dmaskave for slices in y direction

rick reynolds September 14, 2016 08:27AM

Re: 3dmaskave for slices in y direction

mmontchal September 19, 2016 02:40PM