AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

Previous Message Next Message
Message List New Topic Print View
|
ccunningham
April 18, 2018 02:40PM
Hello,

I have started working through the prepreprocessing fatcat functions on our dti data, and I keep running into the same error running fat_proc_convert_dcm_dwis, and as a result, none of the automatic QC png images are generated. The terminal reads:

My command:
@chauffeur_afni -ulay padcombo.nii -prefix pa_qc_sepscl_3 -olay_off -montx 10 -monty 8 -globalrange SLICE -ulay_range 1% 99% -label_mode 1 -label_size 3 -image_label_ijk
**ERROR: pnmcat pbmtext pamstretch pbmtopgm -- not found in path -- program fails"

I'm not sure what this means, or how to fix it?

I would appreciate any help!

Catherine
Reply Quote
RSS
Subject Author Posted

error in fat_proc_convert_dcm_dwis

ccunningham April 18, 2018 02:40PM

Re: error in fat_proc_convert_dcm_dwis

ptaylor April 18, 2018 11:26PM

Re: error in fat_proc_convert_dcm_dwis

ptaylor April 18, 2018 11:30PM

Re: error in fat_proc_convert_dcm_dwis

ccunningham May 21, 2018 11:22AM