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April 18, 2018 02:40PM
Hello,

I have started working through the prepreprocessing fatcat functions on our dti data, and I keep running into the same error running fat_proc_convert_dcm_dwis, and as a result, none of the automatic QC png images are generated. The terminal reads:

My command:
@chauffeur_afni -ulay padcombo.nii -prefix pa_qc_sepscl_3 -olay_off -montx 10 -monty 8 -globalrange SLICE -ulay_range 1% 99% -label_mode 1 -label_size 3 -image_label_ijk
**ERROR: pnmcat pbmtext pamstretch pbmtopgm -- not found in path -- program fails"

I'm not sure what this means, or how to fix it?

I would appreciate any help!

Catherine
Subject Author Posted

error in fat_proc_convert_dcm_dwis

ccunningham April 18, 2018 02:40PM

Re: error in fat_proc_convert_dcm_dwis

ptaylor April 18, 2018 11:26PM

Re: error in fat_proc_convert_dcm_dwis

ptaylor April 18, 2018 11:30PM

Re: error in fat_proc_convert_dcm_dwis

ccunningham May 21, 2018 11:22AM