AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
October 17, 2016 01:33PM
crashlog:

*********------ CRASH LOG ------------------------------***********
Fatal Signal 6 (SIGABRT) received
.......... recent internal history .........................................
THD_init_datablock_brick -- making new dblk->brick
THD_init_datablock_brick -- starting sub-brick creations
++++++++mri_new_7D_generic [8]: {ENTRY (file=mri_new.c line=48) from THD_init_datablock_brick
--------mri_new_7D_generic [8]: EXIT} (file=mri_new.c line=140) to THD_init_datablock_brick
THD_init_datablock_brick -- exiting
-------THD_init_datablock_brick [7]: EXIT} (file=thd_initdblk.c line=1268) to EDIT_empty_copy
------EDIT_empty_copy [6]: EXIT} (file=edt_emptycopy.c line=227) to THD_open_nifti
++++++THD_init_diskptr_names [6]: {ENTRY (file=thd_initdkptr.c line=27) from THD_open_nifti
------THD_init_diskptr_names [6]: EXIT} (file=thd_initdkptr.c line=148) to THD_open_nifti
++++++EDIT_dset_items [6]: {ENTRY (file=edt_dsetitems.c line=125) from THD_open_nifti
+++++++storage_mode_from_prefix [7]: {ENTRY (file=thd_opendset.c line=599) from EDIT_dset_items
++++++++storage_mode_from_filename [8]: {ENTRY (file=thd_opendset.c line=526) from storage_mode_from_prefix
--------storage_mode_from_filename [8]: EXIT} (file=thd_opendset.c line=555) to storage_mode_from_prefix
-------storage_mode_from_prefix [7]: EXIT} (file=thd_opendset.c line=603) to EDIT_dset_items
+++++++AFNI_process_environ [7]: {ENTRY (file=afni_environ.c line=112) from EDIT_dset_items
++++++++AFNI_suck_file [8]: {ENTRY (file=afni_environ.c line=25) from AFNI_process_environ
--------AFNI_suck_file [8]: EXIT} (file=afni_environ.c line=30) to AFNI_process_environ
-------AFNI_process_environ [7]: EXIT} (file=afni_environ.c line=132) to EDIT_dset_items
+++++++THD_init_diskptr_names [7]: {ENTRY (file=thd_initdkptr.c line=27) from EDIT_dset_items
-------THD_init_diskptr_names [7]: EXIT} (file=thd_initdkptr.c line=148) to EDIT_dset_items
+++++++storage_mode_from_filename [7]: {ENTRY (file=thd_opendset.c line=526) from EDIT_dset_items
-------storage_mode_from_filename [7]: EXIT} (file=thd_opendset.c line=555) to EDIT_dset_items
+++++++THD_init_datablock_brick [7]: {ENTRY (file=thd_initdblk.c line=1206) from EDIT_dset_items
THD_init_datablock_brick -- destroying old dblk->brick
++++++++mri_free [8]: {ENTRY (file=mri_free.c line=49) from THD_init_datablock_brick
mri_free -- call killpurge
+++++++++mri_killpurge [9]: {ENTRY (file=mri_purger.c line=259) from mri_free
mri_killpurge -- check if im==NULL ptr=0x20faae0
mri_killpurge -- can't killpurge NULL fname!
---------mri_killpurge [9]: EXIT} (file=mri_purger.c line=270) to mri_free
mri_free -- free im
............................................................................
** Command line was:
3dmaskave -mask /home/gose66/RestingState/PROJECTS/MIND/PRIMARY/wrk/group_analysis/IMFAR_ALL_InteractionEffects/sca_roi_files_to_standard_smooth_fisher_zstd__mask_rois_2mm_sca_roi_2_antswarp_maths_fisher_zstd__scan_func_108567-100_1.func_f/__csf_threshold_096__gm_threshold_07__wm_threshold_096__threshold_0251__compcor_ncomponents_5_selector_pc10linear0wm1global1motion1quadratic0gm0compcor0csf1__bandpass_freqs_0008008__mask_rois_2mm__fwhm_6__fisher_z_score1/merged_files/sca_roi_files_to_standard_smooth_fisher_zstd__mask_rois_2mm_sca_roi_2_antswarp_maths_fisher_zstd_merged_mask.nii.gz /home/gose66/RestingState/PROJECTS/MIND/PRIMARY/out/pipeline_preprocAll/111622-100/sca_roi_files_to_standard_smooth_fisher_zstd/_scan_func_111622-100.func_f/_csf_threshold_0.96/_gm_threshold_0.7/_wm_threshold_0.96/_threshold_0.251/_compcor_ncomponents_5_selector_pc10.linear0.wm1.global1.motion1.quadratic0.gm0.compcor0.csf1/_bandpass_freqs_0.008.0.08/_mask_rois_2mm/_fwhm_6/_fisher_z_score1/sca_roi_2_antswarp_maths_fisher_zstd.nii.gz
............................................................................
Last STATUS: free im
mri_free
THD_init_datablock_brick
EDIT_dset_items
THD_open_nifti
THD_open_one_dataset
THD_open_dataset
3dmaskave main
** Command line was:
3dmaskave -mask /home/gose66/RestingState/PROJECTS/MIND/PRIMARY/wrk/group_analysis/IMFAR_ALL_InteractionEffects/sca_roi_files_to_standard_smooth_fisher_zstd__mask_rois_2mm_sca_roi_2_antswarp_maths_fisher_zstd__scan_func_108567-100_1.func_f/__csf_threshold_096__gm_threshold_07__wm_threshold_096__threshold_0251__compcor_ncomponents_5_selector_pc10linear0wm1global1motion1quadratic0gm0compcor0csf1__bandpass_freqs_0008008__mask_rois_2mm__fwhm_6__fisher_z_score1/merged_files/sca_roi_files_to_standard_smooth_fisher_zstd__mask_rois_2mm_sca_roi_2_antswarp_maths_fisher_zstd_merged_mask.nii.gz /home/gose66/RestingState/PROJECTS/MIND/PRIMARY/out/pipeline_preprocAll/111622-100/sca_roi_files_to_standard_smooth_fisher_zstd/_scan_func_111622-100.func_f/_csf_threshold_0.96/_gm_threshold_0.7/_wm_threshold_0.96/_threshold_0.251/_compcor_ncomponents_5_selector_pc10.linear0.wm1.global1.motion1.quadratic0.gm0.compcor0.csf1/_bandpass_freqs_0.008.0.08/_mask_rois_2mm/_fwhm_6/_fisher_z_score1/sca_roi_2_antswarp_maths_fisher_zstd.nii.gz
** AFNI compile date = May 11 2016
** [[Precompiled binary linux_openmp_64: May 11 2016]]
** Program Crash **
Subject Author Posted

"3dmaskave': munmap_chunk(): invalid pointer" error

jaipel October 14, 2016 05:51PM

Re: "3dmaskave': munmap_chunk(): invalid pointer" error

nimzodisaster October 14, 2016 07:05PM

Re: "3dmaskave': munmap_chunk(): invalid pointer" error

rick reynolds October 14, 2016 09:15PM

Re: "3dmaskave': munmap_chunk(): invalid pointer" error

nimzodisaster October 16, 2016 09:05PM

Re: "3dmaskave': munmap_chunk(): invalid pointer" error

rick reynolds October 17, 2016 08:48AM

Re: "3dmaskave': munmap_chunk(): invalid pointer" error

Bob Cox October 17, 2016 12:04PM

Re: "3dmaskave': munmap_chunk(): invalid pointer" error

nimzodisaster October 17, 2016 01:33PM

Re: "3dmaskave': munmap_chunk(): invalid pointer" error

Bob Cox October 17, 2016 03:36PM

Re: "3dmaskave': munmap_chunk(): invalid pointer" error

nimzodisaster October 17, 2016 04:10PM