AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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Dan
November 04, 2016 05:25PM
I tried running 3dDeconvolve with some 1D files, and with the bucket option I was having difficulty understanding the saved output. I saw on the help file that the cbucket command would be better, however, I'm not able to find the output files now. This is what I've been doing:

3dDeconvolve -input1D /$GSR_data_dir/$s/${s}_data.txt \
-overwrite \
-polort A \
-local_times \
-jobs 4 \
-num_stimts 6 \
-concat '1D: 0 319 638 957 1276 1595' \
-stim_times 1 $Cond_data_dir/$s/NN.txt 'GAM(8.6, 0.547, 2.0)' -stim_label 1 NN \
-stim_times 2 $Cond_data_dir/$s/PP.txt 'GAM(8.6, 0.547, 2.0)' -stim_label 2 PP \
-stim_times 3 $Cond_data_dir/$s/UU.txt 'GAM(8.6, 0.547, 2.0)' -stim_label 3 UU \
-stim_times 4 $Cond_data_dir/$s/NP_PN.txt 'GAM(8.6, 0.547, 2.0)' -stim_label 4 NP_PN \
-stim_times 5 $Cond_data_dir/$s/NU_UN.txt 'GAM(8.6, 0.547, 2.0)' -stim_label 5 NU_UN \
-stim_times 6 $Cond_data_dir/$s/PU_UP.txt 'GAM(8.6, 0.547, 2.0)' -stim_label 6 PU_UP \
-cbucket /$home_dir/GSR_Deconvolve_output/${s}_betas \
-x1D /$home_dir/${s}.x1D

Is there something that's not compatible with 1D files?
Subject Author Posted

3dDeconvolve Issue with cbucket

Dan November 04, 2016 05:25PM

Re: 3dDeconvolve Issue with cbucket

rick reynolds November 04, 2016 08:35PM

Re: 3dDeconvolve Issue with cbucket

Dan November 07, 2016 02:18PM