Hello!
I'm having some issues with MVM... I'm using MVM because of unequal N between groups.
MVM complains about my glt coding but it runs.
If I remove the glts, then there are no error messages anymore.
I don't know if I can trust the output?
I was not able to figure out what is wrong with the coding, perhaps someone has had a similar issue?
My AFNI version is up to date: Precompiled binary macosx_10.7_Intel_64: Nov 21 2016 (Version AFNI_16.3.12)
I'm copying the error and the code I'm using.
Thanks for any tip!
Pascale
[edelweiss:Study1/fMRI/Automne2016] pascaletremblay% tcsh 12c.GroupAnalysis_Duration_MVM_AdditionalAnalyses_FIXED.sh
Warning messages:
1: In if (is.na(outList[[1]][[n]])) errex.AFNI(paste("Inappropriate coding in test No.", :
the condition has length > 1 and only the first element will be used
2: In if (is.na(outList[[1]][[n]])) errex.AFNI(paste("Inappropriate coding in test No.", :
the condition has length > 1 and only the first element will be used
3: In if (is.na(outList[[1]][[n]])) errex.AFNI(paste("Inappropriate coding in test No.", :
the condition has length > 1 and only the first element will be used
4: In if (is.na(outList[[1]][[n]])) errex.AFNI(paste("Inappropriate coding in test No.", :
the condition has length > 1 and only the first element will be used
5: In if (is.na(outList[[1]][[n]])) errex.AFNI(paste("Inappropriate coding in test No.", :
the condition has length > 1 and only the first element will be used
6: In if (is.na(outList[[1]][[n]])) errex.AFNI(paste("Inappropriate coding in test No.", :
the condition has length > 1 and only the first element will be used
7: In if (is.na(outList[[1]][[n]])) errex.AFNI(paste("Inappropriate coding in test No.", :
the condition has length > 1 and only the first element will be used
8: In if (is.na(outList[[1]][[n]])) errex.AFNI(paste("Inappropriate coding in test No.", :
the condition has length > 1 and only the first element will be used
9: In if (is.na(outList[[1]][[n]])) errex.AFNI(paste("Inappropriate coding in test No.", :
the condition has length > 1 and only the first element will be used
Loading required package: lme4
Loading required package: Matrix
Loading required package: reshape2
Loading required package: lsmeans
Loading required package: estimability
************
Welcome to afex. Important changes in the current version:
- Functions for ANOVAs have been renamed to: aov_car(), aov_ez(), and aov_4().
- ANOVA functions return an object of class 'afex_aov' as default, see: ?aov_car
- 'afex_aov' objects can be passed to lsmeans for contrasts and follow-up tests.
- Reset previous (faster) behavior via: afex_options(return_aov='nice')
- Many more arguments can now be set globally via options, see: afex_options()
************
Loading required package: car
++++++++++++++++++++++++++++++++++++++++++++++++++++
***** Summary information of data structure *****
27 subjects : S01 S02 S03 S04 S05 S06 S07 S08 S09 S10 S11 S12 S13 S14 S15 S16 S17 S18 S19 S20 S21 S22 S23 S24 S25 S26 S27
54 response values
2 levels for factor Group : Old Yng
2 levels for factor Condition : Complex Simple
10 post hoc tests
Contingency tables of subject distributions among the categorical variables:
Condition
Group Complex Simple
Old 14 14
Yng 13 13
Tabulation of subjects against each of the categorical variables:
~~~~~~~~~~~~~~
lop$nSubj vs Group:
Old Yng
S01 0 2
S02 0 2
S03 0 2
S04 0 2
S05 0 2
S06 0 2
S07 0 2
S08 0 2
S09 0 2
S10 0 2
S11 0 2
S12 0 2
S13 0 2
S14 2 0
S15 2 0
S16 2 0
S17 2 0
S18 2 0
S19 2 0
S20 2 0
S21 2 0
S22 2 0
S23 2 0
S24 2 0
S25 2 0
S26 2 0
S27 2 0
~~~~~~~~~~~~~~
lop$nSubj vs Condition:
Complex Simple
S01 1 1
S02 1 1
S03 1 1
S04 1 1
S05 1 1
S06 1 1
S07 1 1
S08 1 1
S09 1 1
S10 1 1
S11 1 1
S12 1 1
S13 1 1
S14 1 1
S15 1 1
S16 1 1
S17 1 1
S18 1 1
S19 1 1
S20 1 1
S21 1 1
S22 1 1
S23 1 1
S24 1 1
S25 1 1
S26 1 1
S27 1 1
***** End of data structure information *****
++++++++++++++++++++++++++++++++++++++++++++++++++++
3dMVM \
-prefix Group_2x2_random_ANOVA_Production_3SecBlock_DurationEffects.lh.niml.dset \
-jobs 4 \
-bsVars Group \
-wsVars 'Condition' \
-num_glt 10 \
-gltLabel 1 CvsS -gltCode 1 'Condition : -1* Simple 1* Complex' \
-gltLabel 2 CvsS_OvsY -gltCode 2 'Condition : -1* Simple 1* Complex Group : 1* Old -1* Yng' \
-gltLabel 3 S_Yng -gltCode 3 'Condition : 1* Simple Group : 1* Yng' \
-gltLabel 4 C_Yng -gltCode 4 'Condition : 1* Complex Group : 1* Yng' \
-gltLabel 5 CvsS_Yng -gltCode 5 'Condition : 1* Complex -1* Simple Group : 1* Yng' \
-gltLabel 6 S_Old -gltCode 6 'Condition : 1* Simple Group : 1* Old' \
-gltLabel 7 C_Old -gltCode 7 'Condition : 1* Complex Group : 1* Old' \
-gltLabel 8 CvsS_Old -gltCode 8 'Condition : 1* Complex -1* Simple Group : 1* Old' \
-gltLabel 9 S_AgeDiff -gltCode 9 'Condition : 1* Simple Group : 1* Old -1* Yng' \
-gltLabel 10 C_AgeDiff -gltCode 10 'Condition : 1* Complex Group : 1* Old -1* Yng' \
-dataTable \
Subj Group Condition InputFile \
S01 Yng Simple G1S02.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[2]' \
S01 Yng Complex G1S02.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[14]' \
S02 Yng Simple G1S05.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[2]' \
S02 Yng Complex G1S05.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[14]' \
S03 Yng Simple G1S06.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[2]' \
S03 Yng Complex G1S06.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[14]' \
S04 Yng Simple G1S07.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[2]' \
S04 Yng Complex G1S07.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[14]' \
S05 Yng Simple G1S08.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[2]' \
S05 Yng Complex G1S08.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[14]' \
S06 Yng Simple G1S12.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[2]' \
S06 Yng Complex G1S12.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[14]' \
S07 Yng Simple G1S13.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[2]' \
S07 Yng Complex G1S13.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[14]' \
S08 Yng Simple G1S14.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[2]' \
S08 Yng Complex G1S14.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[14]' \
S09 Yng Simple G1S15.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[2]' \
S09 Yng Complex G1S15.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[14]' \
S10 Yng Simple G1S16.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[2]' \
S10 Yng Complex G1S16.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[14]' \
S11 Yng Simple G1S17.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[2]' \
S11 Yng Complex G1S17.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[14]' \
S12 Yng Simple G1S18.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[2]' \
S12 Yng Complex G1S18.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[14]' \
S13 Yng Simple G1S21.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[2]' \
S13 Yng Complex G1S21.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[14]' \
S14 Old Simple G2S01.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[2]' \
S14 Old Complex G2S01.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[14]' \
S15 Old Simple G2S03.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[2]' \
S15 Old Complex G2S03.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[14]' \
S16 Old Simple G2S06.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[2]' \
S16 Old Complex G2S06.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[14]' \
S17 Old Simple G2S08.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[2]' \
S17 Old Complex G2S08.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[14]' \
S18 Old Simple G2S09.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[2]' \
S18 Old Complex G2S09.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[14]' \
S19 Old Simple G2S11.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[2]' \
S19 Old Complex G2S11.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[14]' \
S20 Old Simple G2S12.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[2]' \
S20 Old Complex G2S12.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[14]' \
S21 Old Simple G2S13.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[2]' \
S21 Old Complex G2S13.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[14]' \
S22 Old Simple G2S14.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[2]' \
S22 Old Complex G2S14.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[14]' \
S23 Old Simple G2S17.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[2]' \
S23 Old Complex G2S17.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[14]' \
S24 Old Simple G2S18.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[2]' \
S24 Old Complex G2S18.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[14]' \
S25 Old Simple G2S20.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[2]' \
S25 Old Complex G2S20.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[14]' \
S26 Old Simple G2S22.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[2]' \
S26 Old Complex G2S22.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[14]' \
S27 Old Simple G2S23.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[2]' \
S27 Old Complex G2S23.Norm.SpeechProduction_AMRegression3SecBLOCK__6mmFWHM.lh.niml.dset'[14]'
