AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 04, 2017 11:50AM
Hi
I'm trying to do the voxel-wise analysis to my data but I don't know the steps.
I have a raw .nii file that contains my rs-fMRI data for a subject.
There are some standard preprocessing steps (Like slice timing, Head motion correction and . . . ) that should be done in general, but I have heard that in voxel-wise processing some of these preprocessing should not be done.

My first question is this:
What preprocessing steps (in general) should be done before jumping to voxel time series extraction? is there any standard procedure for this that I don't know?

And my second question:
After doing the preprocessing steps, I would like to generate a matrix that contains the time-series for each voxel (it would be a very huge matrix, something like 30000 x 250). Is it possible to do so with afni?
Subject Author Posted

voxe-wise data analysis for resting-state fMRI

heretic133 January 04, 2017 11:50AM

Re: voxel-wise data analysis for resting-state fMRI

Bob Cox January 04, 2017 03:52PM

Re: voxel-wise data analysis for resting-state fMRI

heretic133 January 04, 2017 06:16PM

Re: voxel-wise data analysis for resting-state fMRI

Bob Cox January 05, 2017 10:31AM