Hello,
I just installed afni on my laptop, and I'm having an error when I run uber_subject.py. Your help for resolving this issue would be much appreciated. I thought the command "brew install pyqt" lets me only install pyqt5 but not pyqt4, and maybe that's why I'm having an error.
Thank you!
-Chuck
[jglabs-MacBook-Pro:~/afni] jglab% uber_subject.py
**** failed to import PyQt4.QtGui ****
PyQt4 must be installed to run the uber_subject.py GUI
--> see the output of: uber_subject.py -help_install
[jglabs-MacBook-Pro:~/afni] jglab% afni_system_check.py -check_all
-------------------------------- general ---------------------------------
architecture: 64bit
system: Darwin
release: 16.3.0
version: Darwin Kernel Version 16.3.0: Thu Nov 17 20:23:58 PST 2016; root:xnu-3789.31.2~1/RELEASE_X86_64
distribution: 10.12.2 x86_64
number of CPUs: 4
apparent login shell: tcsh
shell RC file: .cshrc (exists)
--------------------- AFNI and related program tests ---------------------
which afni : /Users/jglab/abin/afni
afni version : Precompiled binary macosx_10.7_Intel_64: Jan 3 2017
AFNI_version.txt : AFNI_17.0.00, macosx_10.7_Intel_64, Jan 03 2017
which python : /usr/bin/python
python version : 2.7.10
which R : /usr/local/bin/R
R version : R version 3.3.2 (2016-10-31) -- "Sincere Pumpkin Patch"
which tcsh : /bin/tcsh
instances of various programs found in PATH:
afni : 1 (/Users/jglab/abin/afni)
R : 1 (/Library/Frameworks/R.framework/Versions/3.3/Resources/bin/R)
python : 1 (/usr/bin/python)
python2 : 0
python3 : 1 (/usr/local/Cellar/python3/3.6.0/Frameworks/Python.framework/Versions/3.6/bin/python3.6)
testing ability to start various programs...
afni : success
suma : success
3dSkullStrip : success
uber_subject.py : success
3dAllineate : success
3dRSFC : success
SurfMesh : success
checking for R packages...
rPkgsInstall -pkgs ALL -check : success
checking for $HOME files...
.afnirc : found
.sumarc : found
.afni/help/all_progs.COMP : found
------------------------------ python libs -------------------------------
** python module not found: PyQt4
-------------------------------- env vars --------------------------------
PATH = /usr/local/bin:/usr/local/bin:/usr/local/bin:/usr/local/bin:/sw/bin:/usr/bin:/usr/local/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/Users/jglab/abin:/Users/jglab/abin:/Users/jglab/abin:/Users/jglab/abin:/Users/jglab/abin:/Users/jglab/abin
PYTHONPATH = /usr/local/lib/python2.7/site-packages
R_LIBS =
LD_LIBRARY_PATH =
DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH =
------------------------------ data checks -------------------------------
data dir : found AFNI_data6 under $HOME
top history: 30 Dec 2016 [rickr]: applied updated FS reordering
data dir : found suma_demo under $HOME
top history: .../SUMA_data/Build_tmp on Wed Aug 20 10:04:23 EDT 2014
data dir : found FATCAT_DEMO under $HOME/AFNI_demos
top history: ...CAT/FATCAT_DEMO.Distro, Wed Apr 8 12:41:00 EDT 2015
data dir : found afni_handouts under $HOME
atlas : found TT_N27+tlrc under /Users/jglab/abin
------------------------------ OS specific -------------------------------
which brew : /usr/local/bin/brew
brew version : Homebrew 1.1.6
++ found valid link /usr/local/lib/libgomp.1.dylib
to /usr/local/Cellar/gcc/6.2.0/lib/gcc/6/libgomp.1.dylib
++ found valid link /usr/local/lib/libglib-2.0.dylib
to ../Cellar/glib/2.50.2/lib/libglib-2.0.dylib
++ found 1 dylib files under '/opt/X11/lib/flat_namespace'
-- found 'libXt' dylib files, e.g. /opt/X11/lib/flat_namespace/libXt.6.dylib
** env var DYLD_LIBRARY_PATH is not set to contain /opt/X11/lib/flat_namespace
(so afni and suma may fail)
============================ summary comments ============================
* have python3 but not python2
* consider running: brew install pyqt
* cannot tell if DYLD_LIBRARY_PATH includes /opt/X11/lib/flat_namespace
Edited 1 time(s). Last edit at 01/06/2017 03:41PM by elsewein.
