Hi
I'm using
uber_subject.py to preprocess my resting-state data.
There is an option in expected options section called 'motion censor limit' which is 0.2 by default. I can't fully understand this option. If I'm not wrong,
3dvolreg is used for head motion correction. So if the head motions are handled via 3dvolreg, what is the usage of motion censor limit.
And my other problem is that, when 'motion censor limit' is set to 0.2, I almost loose all (above 90%) subjects. when I set it to 0.3 it gets better, but again lots of subjects will be discarded. for my data 0.4 seems to work fine. But I don't know if 0.4 is a good limit in general.
My second question is "What if I set the 'motion censor limit' to a high value, in order to keep all my TRs" ? What will be the consequences?
