AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Colm Connolly
January 24, 2017 02:06PM
Hey,

I've got a few questions about Gang's gPPI sample script.

Could the \' be added to the end of the 3dDetrend line to prevent it erroring out?

What is supposed to be in the one1.1D file and how should be it be created?

With respect to the line: 
waver -GAM -peak 1 -${TR} ${sub_TR} -input Inter_neu${cond}${cc}${sd}.1D -numout ${n_tp} > Inter_hrf${cond}${cc}${sd}.1D

I cannot find anything in the waver help that indicates that two TRs can be provided in the manner suggested above. Should this be 
waver -GAM -peak 1 -TR ${sub_TR} -input Inter_neu${cond}${cc}${sd}.1D -numout ${n_tp} > Inter_hrf${cond}${cc}${sd}.1D

Thanks in advance,

Colm.
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Subject Author Posted

some questions about the gPPI sample script

Colm Connolly January 24, 2017 02:06PM

Re: some questions about the gPPI sample script

gang January 24, 2017 04:09PM