AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 26, 2017 03:43PM
Hi, Ajay-

Well, scaling would be important, yes, because FMRI has no real unit-- but *how* scaling is actually done is equally important. I don't see how grand mean scaling would be a good way to go for FMRI data.

As discussed in the "Units and Scaling" section of Gang's paper here:
[www.ncbi.nlm.nih.gov]
[www.researchgate.net]
... a better method would be to use voxelwise scaling, to result in a voxelwise BOLD %-signal change interpretation in your data. That would be more comparable *both* across subjects *and* across the brain.

Re. resting vs task for scaling-- the reason scaling might not often be used in resting is that time series are often not compared directly across subjects, as people mainly just calculate correlation coefficients within each subject's brain; scaling doesn't affect correlation coefficient calculation. However, for looking at ALFF changes (i.e., voxelwise magnitude changes), it would likely be quite important to scale, having a %-signal change that would be meaningful (again, both across subjects and across the brain).

--pt
Subject Author Posted

ALFF/Resting state preprocessing - grand mean scaling

AjaySK January 26, 2017 12:36AM

Re: ALFF/Resting state preprocessing - grand mean scaling

ptaylor January 26, 2017 03:43PM