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January 30, 2017 10:59AM
Hi,

I have T1 images from different scanners that I'm trying to convert to nifti format. I tried to3d with the -anat option but the results were clearly wrong. I am now trying Dimon but am getting an error. I'm in the directory that has the .dcm data and here is the command line:

Dimon -infile_pattern '*.dcm' -gert_create_dataset -gert_write_as_nifti

The error I get is: no_wait: no volume found in 170 files

I've been running afni 16.0.01 so I tried that first but also tried 17.0.00 and got the same error. I know the .dcm files are correct since I tried to use University of Oregon's MRI Convert tool and that worked fine. I believe this is a GE scan.

Thanks for your help

Jatin
Subject Author Posted

convert anatomical T1s to nifti

jvaidya January 30, 2017 10:59AM

Re: convert anatomical T1s to nifti

rick reynolds January 30, 2017 12:54PM

Re: convert anatomical T1s to nifti

jvaidya January 30, 2017 02:54PM