AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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susanw
September 28, 2018 02:04PM
Hi,

I'm receiving the below fatal error on a Mac when attempting to use Dimon to read Siemens .IMA files e.g.
Dimon -infile_prefix <filepath> -assume_dicom_mosaic

- The error occurs when using Precompiled binary macosx_10.7_local: Aug 28 2018 (Version AFNI_18.2.15)
but does not occur when using Precompiled binary linux_openmp_64: Sep 27 2018 (Version AFNI_18.2.19)
- Using Precompiled binary macosx_10.7_local works for some .IMA files for some subjects, but the crash error is more frequent than not

thanks,

Susan

=========

Dimon version 4.23 (May 23, 2018) running, use <ctrl-c> to quit...

-- scanning for first volume

Fatal Signal 6 (SIGABRT) received
mri_dicom_header
mri_read_dicom
Dimon
Bottom of Debug Stack
** AFNI version = AFNI_18.2.15 Compile date = Aug 28 2018
** [[Precompiled binary macosx_10.7_local: Aug 28 2018]]
** Program Death **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.



*********------ CRASH LOG ------------------------------***********
Fatal Signal 6 (SIGABRT) received
.......... recent internal history .........................................
++Dimon [2]: {ENTRY (file=Dimon.c line=447) from Bottom of Debug Stack
+++mri_read_dicom [3]: {ENTRY (file=mri_read_dicom.c line=138) from Dimon
++++mri_dicom_header [4]: {ENTRY (file=mri_dicom_hdr.c line=291) from mri_read_dicom
mri_dicom_header -- <myfilepath>0004.0001.2017.10.11.13.08.29.546875.81989757.IMA
+++++DCM_OpenFile [5]: {ENTRY (file=mri_dicom_hdr.c line=1088) from mri_dicom_header
++++++readFile1 [6]: {ENTRY (file=mri_dicom_hdr.c line=7115) from DCM_OpenFile
+++++++readVRLength [7]: {ENTRY (file=mri_dicom_hdr.c line=6484) from readFile1
-------readVRLength [7]: EXIT} (file=mri_dicom_hdr.c line=6671) to readFile1
readFile1 -- readVRLength fails
------readFile1 [6]: EXIT} (file=mri_dicom_hdr.c line=7352) to DCM_OpenFile
-----DCM_OpenFile [5]: EXIT} (file=mri_dicom_hdr.c line=1162) to mri_dicom_header
............................................................................
mri_dicom_header
mri_read_dicom
Dimon
** AFNI compile date = Aug 28 2018
** [[Precompiled binary macosx_10.7_local: Aug 28 2018]]
** Program Crash **
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Subject Author Posted

(Dimon) Program death with mac but not linux binaries

susanw September 28, 2018 02:04PM

Re: (Dimon) Program death with mac but not linux binaries

rick reynolds October 01, 2018 11:08AM