AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 13, 2017 06:33PM
Hi Gang,

I switched over to 3dMVM, like you suggested. Now I'm getting an error I can't seem to solve. I've seen this elsewhere on the message board, but the solutions don't seem to apply.

Again, I have two within-subjects variables of interest, one continuous between-subjects variable of interest (Anx), and four covariates of non-interest (two of which are continuous). I'd like to model the three-way interaction between the two within-subjects variables and Anx.

When I run the code below, I get this error: Incorrect level coding in variable Anx : :

Any recommendations for fixes? Should I instead list "Anx" as a qVar, then model the interactions of interest in glts?
3dMVM \
-prefix MVM.nii \
-jobs 4 \
-mask mask.group_anat.nii \
-bsVars 'Anx' \
-wsVars 'Cond*Emo' \
-qVars 'age,IQ' \
-qVarCenters '32.94,97.65' \
-SS_type 3 \
-GES \
-num_glt 4 \
-gltLabel 1 'Standard_Anx' -gltCode 1 'Cond : 1*Standard Anx :' \
-gltLabel 2 'Reward_Anx' -gltCode 2 'Cond : 1*Reward Anx :' \
...
-dataTable \
Subj   Cond       Emo     Anx     age   race   IQ     gen    InputFile \
s1     Standard   Happy   13      45    -0.5   109   -0.5    stats.s1.nii'[Standard_Happy_GLT#0_Coef]' \
...
Thanks again.
Subject Author Posted

3dLME Setup

pdeming February 13, 2017 11:27AM

Re: 3dLME Setup

gang February 13, 2017 01:56PM

Re: 3dLME Setup

pdeming February 13, 2017 03:44PM

Re: 3dLME Setup

pdeming February 13, 2017 06:33PM

Re: 3dLME Setup

gang February 14, 2017 08:07AM

Re: 3dLME Setup

pdeming February 14, 2017 09:37AM