AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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AjaySK
March 15, 2017 12:29PM
Hi Afni Experts
I wanted to follow up regarding my previous question.

1) If my anatomical file (already rigidly aligned to resting state scan) is RPI and warped to an LPI MNI template, is it necessary to first use 3dResample -orient LPI on my anatomical scan to match the MNI template or does it not matter (i.e. AFNI deals with those differences automatically)?

2) If I apply that transform to warp my resting state scan to MNI, does it matter if my Resting state scan is starting off as RAI (instead of the anatomical RPI) or would I need to first run 3dResample -orient to convert it to RPI (to match the anatomical scan) or LPI to match the final MNI template?


Thanks
Ajay
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Subject Author Posted

3dresample/3drefit/3dWarp for oblique datasets and slice timing

AjaySK February 20, 2017 08:02AM

Re: 3dresample/3drefit/3dWarp for oblique datasets and slice timing

Daniel Glen February 21, 2017 04:53PM

Re: 3dresample/3drefit/3dWarp for oblique datasets and slice timing

AjaySK March 02, 2017 09:24AM

Re: 3dresample/3drefit/3dWarp for oblique datasets and slice timing

AjaySK March 15, 2017 12:29PM

Re: 3dresample/3drefit/3dWarp for oblique datasets and slice timing

rick reynolds March 18, 2017 08:14PM

Re: 3dresample/3drefit/3dWarp for oblique datasets and slice timing

AjaySK March 21, 2017 09:11AM

Re: 3dresample/3drefit/3dWarp for oblique datasets and slice timing

Daniel Glen March 21, 2017 12:46PM

Re: 3dresample/3drefit/3dWarp for oblique datasets and slice timing

AjaySK March 24, 2017 11:42AM