AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 29, 2017 10:58PM
I performed subject-level analysis in AFNI for a specific task-based scan, which included standard steps in afni_proc.py such as motion correction, detrending, etc. In step, I also obtained t-statistics for event stimuli. Suppose the t-statistic spatial maps for a stimulus are in a subbrick labeled "stim1" in the stats/REML output file. I wanted to combined the "stim1" subbrick for each subject in the sample into a single volume named "sample.nii" that I plan to use as input into the Broccoli permutation testing software for group analysis. What is the best function for doing so that will guarantee the order of volumes is preserved? Thank you.
Subject Author Posted

Concatenating subbricks across subjects into single nifti file

cmehta March 29, 2017 10:58PM

Re: Concatenating subbricks across subjects into single nifti file

Peter Molfese March 30, 2017 10:38AM

Re: Concatenating subbricks across subjects into single nifti file

rick reynolds March 30, 2017 12:15PM

Re: Concatenating subbricks across subjects into single nifti file

cmehta March 31, 2017 04:53AM

Re: Concatenating subbricks across subjects into single nifti file

rick reynolds March 31, 2017 08:39AM