AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Liu Mengxing
February 04, 2019 08:03AM
Hi afni group,

I am using 3dDeconvolve to do subject level GLM, and I have the stim file as 0000011111000000000111, and also I have one from the afni function waver, 
waver -TR 2 -numout 888 -peak 1.0 -input "$task"1D.mx > "$task"1D.1d
I wonder which one should I use when I define the parameter of -stim_file in 3dDeconvolve?

It's a block design with varying durations, so I prefer using -stim_file rather than -stim_times.

Thanks a lot!

Meng



Edited 1 time(s). Last edit at 02/04/2019 08:06AM by Liu Mengxing.
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Subject Author Posted

3dDeconvolve -stim_file uses one zero or HDF

Liu Mengxing February 04, 2019 08:03AM

Re: 3dDeconvolve -stim_file uses one zero or HDF

rick reynolds February 05, 2019 11:14AM

Re: 3dDeconvolve -stim_file uses one zero or HDF

Liu Mengxing February 07, 2019 06:26AM

Re: 3dDeconvolve -stim_file uses one zero or HDF

rick reynolds February 07, 2019 09:40AM

Re: 3dDeconvolve -stim_file uses one zero or HDF

Liu Mengxing February 07, 2019 10:18AM

Re: 3dDeconvolve -stim_file uses one zero or HDF

rick reynolds February 07, 2019 11:02AM