Hi Gang , thanks for your quick email.
afni -ver
Precompiled binary macosx_10.7_local: May 21 2017 (Version
AFNI_17.1.06): this is the AFNI version I used.
The same error was given when I ran it on the lab's server using Version AFNI_16.2.16.
Below is the output on the terminal when I ran 3dLME.txt. I wonder if I made some errors in the setting. Any idea? Many thanks in advance.
Sophia
Output on the terminal
sh -x mk_3dLME.txt
+ 3dLME -prefix DBD_adult -model 'cond*group' -mask group_mask_to_standard_2mm_gm_25pc_all_28_R1.nii.gz -ranEff '~1' -SS_type 3 -num_glt 2 -gltLabel 1 r1-r2 -gltCode 1 'cond : 1*r1 -1*r2' -gltLabel 2 ag_r1-r2 -gltCode 2 'cond : 1*r1 -1*r2 group : 1*ag' -num_glf 1 -glfLabel 1 r1-r2 -glfCode 1 'group : 1*ctr & 1*ag cond : 1*r1 -1*r2' -dataTable Subj cond group InputFile DBD_A00 r1 ag 'DBD_A00_r1+tlrc[r1#0_Coef]' DBD_A00 r2 ag 'DBD_A00_r2+tlrc[r2#0_Coef]' DBD_A03 r1 ag 'DBD_A03_r1+tlrc[r1#0_Coef]' DBD_A03 r2 ag 'DBD_A03_r2+tlrc[r2#0_Coef]' DBD_A05 r1 ag 'DBD_A05_r1+tlrc[r1#0_Coef]' DBD_A05 r2 ag 'DBD_A05_r2+tlrc[r2#0_Coef]' DBD_A06 r1 ag 'DBD_A06_r1+tlrc[r1#0_Coef]' DBD_A06 r2 ag 'DBD_A06_r2+tlrc[r2#0_Coef]' DBD_A07 r1 ag 'DBD_A07_r1+tlrc[r1#0_Coef]' DBD_A07 r2 ag 'DBD_A07_r2+tlrc[r2#0_Coef]' DBD_A08 r1 ag 'DBD_A08_r1+tlrc[r1#0_Coef]' DBD_A08 r2 ag 'DBD_A08_r2+tlrc[r2#0_Coef]' DBD_A10 r1 ag 'DBD_A10_r1+tlrc[r1#0_Coef]' DBD_A10 r2 ag 'DBD_A10_r2+tlrc[r2#0_Coef]' DBD_A11 r1 ag 'DBD_A11_r1+tlrc[r1#0_Coef]' DBD_A11 r2 ag 'DBD_A11_r2+tlrc[r2#0_Coef]' DBD_A15 r1 ag 'DBD_A15_r1+tlrc[r1#0_Coef]' DBD_A15 r2 ag 'DBD_A15_r2+tlrc[r2#0_Coef]' DBD_A20 r1 ag 'DBD_A20_r1+tlrc[r1#0_Coef]' DBD_A20 r2 ag 'DBD_A20_r2+tlrc[r2#0_Coef]' DBD_A21 r1 ag 'DBD_A21_r1+tlrc[r1#0_Coef]' DBD_A21 r2 ag 'DBD_A21_r2+tlrc[r2#0_Coef]' DBD_A22 r1 ag 'DBD_A22_r1+tlrc[r1#0_Coef]' DBD_A22 r2 ag 'DBD_A22_r2+tlrc[r2#0_Coef]' DBD_A23 r1 ag 'DBD_A23_r1+tlrc[r1#0_Coef]' DBD_A23 r2 ag 'DBD_A23_r2+tlrc[r2#0_Coef]' DBD_A24 r1 ag 'DBD_A24_r1+tlrc[r1#0_Coef]' DBD_A24 r2 ag 'DBD_A24_r2+tlrc[r2#0_Coef]' DBD_A25 r1 ag 'DBD_A25_r1+tlrc[r1#0_Coef]' DBD_A25 r2 ag 'DBD_A25_r2+tlrc[r2#0_Coef]' DBD_A26 r1 ag 'DBD_A26_r1+tlrc[r1#0_Coef]' DBD_A26 r2 ag 'DBD_A26_r2+tlrc[r2#0_Coef]' DBD_A27 r1 ag 'DBD_A27_r1+tlrc[r1#0_Coef]' DBD_A27 r2 ag 'DBD_A27_r2+tlrc[r2#0_Coef]' DBD_A28 r1 ag 'DBD_A28_r1+tlrc[r1#0_Coef]' DBD_A28 r2 ag 'DBD_A28_r2+tlrc[r2#0_Coef]' DBD_A01 r1 ctr 'DBD_A01_r1+tlrc[r1#0_Coef]' DBD_A01 r2 ctr 'DBD_A01_r2+tlrc[r2#0_Coef]' DBD_A02 r1 ctr 'DBD_A02_r1+tlrc[r1#0_Coef]' DBD_A02 r2 ctr 'DBD_A02_r2+tlrc[r2#0_Coef]' DBD_A04 r1 ctr 'DBD_A04_r1+tlrc[r1#0_Coef]' DBD_A04 r2 ctr 'DBD_A04_r2+tlrc[r2#0_Coef]' DBD_A09 r1 ctr 'DBD_A09_r1+tlrc[r1#0_Coef]' DBD_A09 r2 ctr 'DBD_A09_r2+tlrc[r2#0_Coef]' DBD_A12 r1 ctr 'DBD_A12_r1+tlrc[r1#0_Coef]' DBD_A12 r2 ctr 'DBD_A12_r2+tlrc[r2#0_Coef]' DBD_A14 r1 ctr 'DBD_A14_r1+tlrc[r1#0_Coef]' DBD_A14 r2 ctr 'DBD_A14_r2+tlrc[r2#0_Coef]' DBD_A16 r1 ctr 'DBD_A16_r1+tlrc[r1#0_Coef]' DBD_A16 r2 ctr 'DBD_A16_r2+tlrc[r2#0_Coef]' DBD_A17 r1 ctr 'DBD_A17_r1+tlrc[r1#0_Coef]' DBD_A17 r2 ctr 'DBD_A17_r2+tlrc[r2#0_Coef]' DBD_A18 r1 ctr 'DBD_A18_r1+tlrc[r1#0_Coef]' DBD_A18 r2 ctr 'DBD_A18_r2+tlrc[r2#0_Coef]' DBD_A19 r1 ctr 'DBD_A19_r1+tlrc[r1#0_Coef]' DBD_A19 r2 ctr 'DBD_A19_r2+tlrc[r2#0_Coef]'
Loading required package: nlme
Package nlme loaded successfully!
Loading required package: phia
Loading required package: car
Package phia loaded successfully!
++++++++++++++++++++++++++++++++++++++++++++++++++++
***** Summary information of data structure *****
28 subjects : DBD_A00 DBD_A01 DBD_A02 DBD_A03 DBD_A04 DBD_A05 DBD_A06 DBD_A07 DBD_A08 DBD_A09 DBD_A10 DBD_A11 DBD_A12 DBD_A14 DBD_A15 DBD_A16 DBD_A17 DBD_A18 DBD_A19 DBD_A20 DBD_A21 DBD_A22 DBD_A23 DBD_A24 DBD_A25 DBD_A26 DBD_A27 DBD_A28
56 response values
2 levels for factor cond : r1 r2
2 levels for factor group : ag ctr
2 post hoc tests
Contingency tables of subject distributions among the categorical variables:
Tabulation of subjects against all categorical variables
~~~~~~~~~~~~~~
Subj vs cond:
r1 r2
DBD_A00 1 1
DBD_A01 1 1
DBD_A02 1 1
DBD_A03 1 1
DBD_A04 1 1
DBD_A05 1 1
DBD_A06 1 1
DBD_A07 1 1
DBD_A08 1 1
DBD_A09 1 1
DBD_A10 1 1
DBD_A11 1 1
DBD_A12 1 1
DBD_A14 1 1
DBD_A15 1 1
DBD_A16 1 1
DBD_A17 1 1
DBD_A18 1 1
DBD_A19 1 1
DBD_A20 1 1
DBD_A21 1 1
DBD_A22 1 1
DBD_A23 1 1
DBD_A24 1 1
DBD_A25 1 1
DBD_A26 1 1
DBD_A27 1 1
DBD_A28 1 1
~~~~~~~~~~~~~~
Subj vs group:
ag ctr
DBD_A00 2 0
DBD_A01 0 2
DBD_A02 0 2
DBD_A03 2 0
DBD_A04 0 2
DBD_A05 2 0
DBD_A06 2 0
DBD_A07 2 0
DBD_A08 2 0
DBD_A09 0 2
DBD_A10 2 0
DBD_A11 2 0
DBD_A12 0 2
DBD_A14 0 2
DBD_A15 2 0
DBD_A16 0 2
DBD_A17 0 2
DBD_A18 0 2
DBD_A19 0 2
DBD_A20 2 0
DBD_A21 2 0
DBD_A22 2 0
DBD_A23 2 0
DBD_A24 2 0
DBD_A25 2 0
DBD_A26 2 0
DBD_A27 2 0
DBD_A28 2 0
***** End of data structure information *****
++++++++++++++++++++++++++++++++++++++++++++++++++++
Reading input files now...
** ERROR: Dset DBD_A00_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A00_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A00_r2+tlrc[r2#0_Coef] could not be loaded
** ERROR: Dset DBD_A03_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A03_r2+tlrc[r2#0_Coef] could not be loaded
** ERROR: Dset DBD_A05_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A05_r2+tlrc[r2#0_Coef] could not be loaded
** ERROR: Dset DBD_A06_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A06_r2+tlrc[r2#0_Coef] could not be loaded
** ERROR: Dset DBD_A07_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A07_r2+tlrc[r2#0_Coef] could not be loaded
** ERROR: Dset DBD_A08_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A08_r2+tlrc[r2#0_Coef] could not be loaded
** ERROR: Dset DBD_A10_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A10_r2+tlrc[r2#0_Coef] could not be loaded
** ERROR: Dset DBD_A11_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A11_r2+tlrc[r2#0_Coef] could not be loaded
** ERROR: Dset DBD_A15_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A15_r2+tlrc[r2#0_Coef] could not be loaded
** ERROR: Dset DBD_A20_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A20_r2+tlrc[r2#0_Coef] could not be loaded
** ERROR: Dset DBD_A21_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A21_r2+tlrc[r2#0_Coef] could not be loaded
** ERROR: Dset DBD_A22_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A22_r2+tlrc[r2#0_Coef] could not be loaded
** ERROR: Dset DBD_A23_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A23_r2+tlrc[r2#0_Coef] could not be loaded
** ERROR: Dset DBD_A24_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A24_r2+tlrc[r2#0_Coef] could not be loaded
** ERROR: Dset DBD_A25_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A25_r2+tlrc[r2#0_Coef] could not be loaded
** ERROR: Dset DBD_A26_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A26_r2+tlrc[r2#0_Coef] could not be loaded
** ERROR: Dset DBD_A27_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A27_r2+tlrc[r2#0_Coef] could not be loaded
** ERROR: Dset DBD_A28_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A28_r2+tlrc[r2#0_Coef] could not be loaded
** ERROR: Dset DBD_A01_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A01_r2+tlrc[r2#0_Coef] could not be loaded
** ERROR: Dset DBD_A02_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A02_r2+tlrc[r2#0_Coef] could not be loaded
** ERROR: Dset DBD_A04_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A04_r2+tlrc[r2#0_Coef] could not be loaded
** ERROR: Dset DBD_A09_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A09_r2+tlrc[r2#0_Coef] could not be loaded
** ERROR: Dset DBD_A12_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A12_r2+tlrc[r2#0_Coef] could not be loaded
** ERROR: Dset DBD_A14_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A14_r2+tlrc[r2#0_Coef] could not be loaded
** ERROR: Dset DBD_A16_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A16_r2+tlrc[r2#0_Coef] could not be loaded
** ERROR: Dset DBD_A17_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A17_r2+tlrc[r2#0_Coef] could not be loaded
** ERROR: Dset DBD_A18_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A18_r2+tlrc[r2#0_Coef] could not be loaded
** ERROR: Dset DBD_A19_r1+tlrc[r1#0_Coef] could not be loaded
** ERROR: Dset DBD_A19_r2+tlrc[r2#0_Coef] could not be loaded
** Error:
At least one of the input files has different dimensions!
Run "3dinfo -header_line -prefix -same_grid -n4 *.HEAD" in the directory where
the files are stored, and pinpoint out which file(s) is the trouble maker.
Replace *.HEAD with *.nii or something similar for other file formats.
