AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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June 28, 2017 12:50PM
Yes. Many artifacts can lead to such striping, but motion
is liekly the main culprit.

The 3dTshift operation is supposed to synchronize signals,
which should increase correlations (due to BOLD, motion,
etc), but that depends on a given signal being spatially
consistent. In some ways motion is consistent, in some
ways not. It is the unpredictability of motion effects
that makes it so difficult to handle in FMRI data.

Also, Fourier interpolation could hurt here (which is why
we do not tend to use it). It can cause spikes to ring
through the data, which might increase correlations.

It is indeed hard to conclude much from this. As with
most options in FMRI, if they were simple, there would
be no questions, and they would not even be options...

- rick
Subject Author Posted

Slice timing correction multi-band data 3dTshift Attachments

jashaj June 23, 2017 03:15PM

Re: Slice timing correction multi-band data 3dTshift

Peter Molfese June 25, 2017 10:04PM

Re: Slice timing correction multi-band data 3dTshift

rick reynolds June 26, 2017 02:15PM

Re: Slice timing correction multi-band data 3dTshift Attachments

jashaj June 26, 2017 04:40PM

Re: Slice timing correction multi-band data 3dTshift

rick reynolds June 28, 2017 10:23AM

Re: Slice timing correction multi-band data 3dTshift Attachments

jashaj June 28, 2017 11:29AM

Re: Slice timing correction multi-band data 3dTshift

rick reynolds June 28, 2017 12:50PM

Re: Slice timing correction multi-band data 3dTshift

jashaj June 30, 2017 12:23PM