AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 31, 2017 09:48AM
Hi Ajay,

Yes, the centos_7 package is compiled with OpenMP support.


What is the RAM comparison between those systems? There is a
reasonable chance that the RedHat system ran out of memory.

It is also worth noting that there was a small bug in the handling of
warp file names, however that seems very unlikely to be relevant.
But see this thread.

In any case, it might be worth trying that exact command with the
centos_7 binaries. To do so, go to the results directory and:

wget [afni.nimh.nih.gov]
chmod 755 3dNwarpApply
./3dNwarpApply -interp NN -nwarp ...

The 3dNwarpApply command should be the exact same one you
ran before, but with ./3dNwarpApply, to use the one in the current
directory.

Does that work any better? Probably not, but it is worth trying.
Also, try to monitor memory use while it runs, if possible.

- rick
Subject Author Posted

Potential Bug 3dQwarp and Red Hat Enterprise Linux Server release 7.3 (Maipo)

AjaySK June 28, 2017 11:06PM

Re: Potential Bug 3dQwarp and Red Hat Enterprise Linux Server release 7.3 (Maipo)

Bob Cox July 03, 2017 09:26AM

Re: Potential Bug 3dQwarp and Red Hat Enterprise Linux Server release 7.3 (Maipo)

AjaySK July 28, 2017 09:53AM

Re: Potential Bug 3dQwarp and Red Hat Enterprise Linux Server release 7.3 (Maipo)

rick reynolds July 28, 2017 09:58AM

Re: Potential Bug 3dQwarp and Red Hat Enterprise Linux Server release 7.3 (Maipo)

AjaySK July 29, 2017 09:53AM

Re: Potential Bug 3dQwarp and Red Hat Enterprise Linux Server release 7.3 (Maipo)

rick reynolds July 31, 2017 09:48AM