AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 07, 2017 11:11AM
Hello Pete,
Thank you again for your help; I am following your suggestions and they are helpful.

I wanted to ask you one thing regarding the Haskins atlas. In the first-pass, I performed group analysis on sample ages 8 to 21 all having non-linear registrations to the TT-N27 template.
There after, I identified significant clusters with 3dclust (placed in clust+tlrc). Then I ran whereami of these clusters using both CA_N27_ML and the Haskins_Pediatric_Nonlinear_1.0 atlases, that is,

whereami -atlas CA_N27_ML -omask clust+tlrc

3drefit -space HaskinsPeds clust+tlrc;  
whereami -atlas Haskins_Pediatric_Nonlinear_1.0 -omask clust+tlrc

The idea here is, for the first-pass analysis, I would report ROIs overlapping with significant clusters under both the CA_N27_ML and Haskins_Pediatric_Nonlinear_1.0 atlases (separately).

For example, it could be somehting like:
CA_N27_M: Left Insula (73.9%), Left pars triangularis (9.9%)
Haskins Pediatrics: Left pars opercularis (53.6%), Left Insula (26.2%), Left lateral orbitofrontal (12.6%)

Is it kosher to use Haskins Pediatrics atlas for reporting results in group analysis of scans registered to TT-N27? More pointedly, is it fundamentally wrong from technical point of view?
Subject Author Posted

Different age groups in sample

cmehta July 05, 2017 08:08PM

Re: Different age groups in sample

Peter Molfese July 06, 2017 10:32AM

Re: Different age groups in sample

cmehta July 06, 2017 02:31PM

Re: Different age groups in sample

cmehta July 07, 2017 11:11AM

Re: Different age groups in sample

Peter Molfese July 07, 2017 11:29AM

Re: Different age groups in sample

cmehta July 14, 2017 10:54AM

Re: Different age groups in sample

Daniel Glen July 14, 2017 04:51PM

Re: Different age groups in sample

cmehta July 17, 2017 02:51PM