AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Sue_TS
July 18, 2017 08:25AM
Hi, Pt

GSL isn't installed on my computer.
Here is the result of afni system check:

afni_system_check.py -check_all
-------------------------------- general ---------------------------------
architecture: 64bit ELF
system: Linux
release: 4.8.0-58-generic
version: #63~16.04.1-Ubuntu SMP Mon Jun 26 18:08:51 UTC 2017
distribution: Ubuntu 16.04 xenial
number of CPUs: 8
apparent login shell: tcsh
shell RC file: .cshrc (exists)

--------------------- AFNI and related program tests ---------------------
which afni : /home/y/abin/afni
afni version : Precompiled binary linux_openmp_64: Mar 10 2017
: AFNI_17.0.15
AFNI_version.txt : AFNI_17.0.15, linux_openmp_64, Mar 10 2017
which python : /usr/bin/python
python version : 2.7.12
which R : /usr/bin/R
R version : R version 3.4.0 (2017-04-21) -- "You Stupid Darkness"
which tcsh : /usr/bin/tcsh

instances of various programs found in PATH:
afni : 1 (/home/y/abin/afni)
R : 1 (/usr/bin/R)
python : 1 (/usr/bin/python2.7)
python2 : 1 (/usr/bin/python2.7)
python3 : 1 (/usr/bin/python3.5)


testing ability to start various programs...
afni : success
suma : success
3dSkullStrip : success
uber_subject.py : success
3dAllineate : success
3dRSFC : success
SurfMesh : success

checking for R packages...
rPkgsInstall -pkgs ALL -check : success

checking for $HOME files...
.afnirc : found
.sumarc : found
.afni/help/all_progs.COMP : found

------------------------------ python libs -------------------------------
++ module 'PyQt4' found at /usr/lib/python2.7/dist-packages/PyQt4
++ module loaded: PyQt4

-------------------------------- env vars --------------------------------
PATH = /home/y/bin:/home/y/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/y/abin

PYTHONPATH =
R_LIBS = /home/y/R

LD_LIBRARY_PATH =
DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH =

------------------------------ data checks -------------------------------
data dir : found AFNI_data6 under $HOME/CD
top history: 30 Dec 2016 [rickr]: applied updated FS reordering
data dir : found AFNI_demos under $HOME/CD
top history: ... [pault]: remove rank from FATCAT_DEMO, FAT_MVM_DEMO
data dir : found suma_demo under $HOME/CD
top history: .../SUMA_data/Build_tmp on Wed Aug 20 10:04:23 EDT 2014
data dir : found afni_handouts under $HOME/CD
atlas : found TT_N27+tlrc under ./

------------------------------ OS specific -------------------------------
which apt-get : /usr/bin/apt-get
apt-get version : apt 1.2.20 (amd64)

have Ubuntu system: Ubuntu 16.04 xenial

========================= nothing to fix, yay! =========================

Best regards
Sue
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Subject Author Posted

Question about 3dNetcorr

Sue_TS July 18, 2017 05:16AM

Re: Question about 3dNetcorr

ptaylor July 18, 2017 06:11AM

Re: Question about 3dNetcorr

Sue_TS July 18, 2017 07:53AM

Re: Question about 3dNetcorr

ptaylor July 18, 2017 08:12AM

Re: Question about 3dNetcorr

Sue_TS July 18, 2017 08:25AM

Re: Question about 3dNetcorr

ptaylor July 18, 2017 09:50AM

Re: Question about 3dNetcorr

Sue_TS July 18, 2017 10:01AM