AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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September 14, 2017 01:59PM
I'm not sure where the problem is. The output seems to show there might be something different about the range of values in the data. Try 3dUnifize first or scale separately with 3dcalc. Another way is to align to a template with something like the method used in the macaque alignment script by transforming the template brain back to the native space (See macaque_align.csh). Also consider you may not need to skullstrip at all depending on what you want to accomplish.
Subject Author Posted

Rodent skull stripping

jbcocjin September 13, 2017 05:08PM

Re: Rodent skull stripping

Daniel Glen September 14, 2017 01:59PM

Re: Rodent skull stripping Attachments

jbcocjin September 15, 2017 12:46PM

Re: Rodent skull stripping

Daniel Glen September 19, 2017 11:18AM