AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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September 28, 2017 10:50AM
Hi everybody,

I'm trying to install AFNI for the first time in a very long time on my mac running 10.12.6. Looking in [afni.nimh.nih.gov] I see that there are several different binaries for MAC. I've downloaded (yesterday sept 27, 2017) the macos_10.12_local.tgz tarball and unpacked it. When I run afni -ver I get

When I try to tun it I get:
colmconn@Colms-MacBook-Pro:~/afni.macosx_10_12> ./afni -ver
Precompiled binary macos_10.12_local: Sep 19 2017 (Version AFNI_17.2.16)
colmconn@Colms-MacBook-Pro:~/afni.macosx_10_12> ./afni
Precompiled binary macos_10.12_local: Sep 19 2017 (Version AFNI_17.2.16)

Thanks go to D Handwerker for useful feedback

Initializing: X11
++ If you are using XQuartz 2.7.10 (or later), and AFNI crashes when
 + opening windows, or you cannot type text into AFNI popup windows,
 + you might need to set an environment variable to solve this problem:
 +   setenv DYLD_LIBRARY_PATH /opt/X11/lib/flat_namespace
 + This command is best put in your startup ~/.cshrc file, so that
 + it will be invoked for every (t)csh shell you open.

[The X.Org Foundation v 11804000].dyld: Library not loaded: /usr/local/lib/libgcc_s.1.dylib
  Referenced from: /Users/colmconn/afni/djpeg
  Reason: image not found
dyld: Library not loaded: /usr/local/lib/libgcc_s.1.dylib
  Referenced from: /Users/colmconn/afni/djpeg
  Reason: image not found

Fatal Signal 11 (SIGSEGV) received
       ISQ_record_button
      open_MCW_imseq
     SPLASH_popup_image
    AFNI_splashup
   MAIN_workprocess
  AFNI:main
 Bottom of Debug Stack
** AFNI version = AFNI_17.2.16  Compile date = Sep 19 2017
** [[Precompiled binary macos_10.12_local: Sep 19 2017]]
** Program Death **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.
** Crash log is appended to file /Users/colmconn/.afni.crashlog
++ AFNI is detached from terminal.
colmconn@Colms-MacBook-Pro:~/afni.macosx_10_12>

Am I using the wrong tarball? If so which one should I be using?

Also going through the list of mac binaries on the download site, the timestamps do not reflect the latest build date at [afni.nimh.nih.gov] Is there something up with the mac build infrastructure?

Thanks for you help.
Subject Author Posted

installation on mac os 10.12.6

Colm Connolly September 28, 2017 10:50AM

Re: installation on mac os 10.12.6

rick reynolds September 28, 2017 11:53AM

Re: installation on mac os 10.12.6

discoraj September 28, 2017 11:58AM