AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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mmontchal
October 02, 2017 01:45PM 
        #L nACC
	# extract timecourse of L nACC
	3dmaskave -quiet -mask ../../Zach_ROIs_onepointfive.nii -mrange 43 44 $1.Entropy.Mood_MOTIONpreprocessed/ANTified_errts_onepointfive.nii.gz > bilat_nACC_timecourse15.txt

	#Enforce a TR structure on the data (IMPORTANT!!! Otherwise 3dfim+ in the next step will barf)
	3drefit -TR 2.0 $1.Entropy.Mood_MOTIONpreprocessed/ANTified_errts_onepointfive.nii.gz

	#Create functional connectivity  map
	3dfim+ -input $1.Entropy.Mood_MOTIONpreprocessed/ANTified_errts_onepointfive.nii.gz -polort 0 -ideal_file bilat_nACC_timecourse15.txt -out Correlation -bucket bilat_nACC_Corr15

	# convert to z scores
	3dcalc -a bilat_nACC_Corr15+orig. -expr 'log((1+a)/(1-a))/2' -prefix $1.Entropy.Mood_MOTIONpreprocessed/bilat_nACC_Corr15map_z
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Subject Author Posted

voxels "missing" from resting state functional connectivity map

mmontchal October 02, 2017 01:23PM

Re: voxels "missing" from resting state functional connectivity map

discoraj October 02, 2017 01:41PM

Re: voxels "missing" from resting state functional connectivity map

mmontchal October 02, 2017 01:45PM

Re: voxels "missing" from resting state functional connectivity map

Bob Cox October 10, 2017 10:40AM

Re: voxels "missing" from resting state functional connectivity map

mmontchal October 10, 2017 08:58PM

Re: voxels "missing" from resting state functional connectivity map

discoraj October 11, 2017 04:23PM