AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 25, 2017 12:21PM
Well, now I know that '3dinfo' provides more information about the 'stats.${subject}_REML+orig' images/bricks than its AFNI header. Thus, I see that some bricks are coefficient maps rather than statistic maps. Yesterday I was thinking that all 9 bricks in my 'stats.${subject}_REML+orig' are F- and t- statistic maps, some of which referred to the motion covariates... Now I know that there are no images/bricks referring to the motion covariates.

I am only interested in extracting the statistic map corresponding to the HRF amplitude. Yesterday I called this statistic map the "ultimate" one. I am still not sure whether its the statistic map in brick [2]:

-- At sub-brick #0 'activation_stimulus#0_Tstat' datum type is float: -6.67307 to 22.7179
statcode = fitt; statpar = 88

or the one in brick [7]:

-- At sub-brick #0 'activity#0_Tstat' datum type is float: -8.30011 to 19.8636
statcode = fitt; statpar = 88

They are very similar to each other. Now I also know where the degrees of freedom are saved and how to convert a t-statistic map to a z-statistic map in AFNI:

[afni.nimh.nih.gov]

I am not sure what is the difference between bricks [2] and [7] in my 'stats.${subject}_REML+orig'. Could you please give a hint?

Best wishes,

Wiktor Olszowy
Subject Author Posted

where is the z or t statistic map?

wo222 October 23, 2017 02:41PM

Re: where is the z or t statistic map? Attachments

wo222 October 24, 2017 01:43PM

Re: where is the z or t statistic map?

wo222 October 25, 2017 12:21PM