afni.nimh.nih.gov

Dear All.

I have got an error message.

dyld: Library not loaded: /usr/local/lib/libgomp.1.dylib
Referenced from: /Users/smartlab/abin/3dDespike
Reason: image not found


I checked the status of my Mac. Please see below.
How can I solve this problem?

Please help for me.

Thanks a lot.


-----afni_system_check.py -check_all

Checking for the Xcode Command Line Tools...
No receipt for 'com.apple.pkg.CLTools_Executables' found at '/'.
The Xcode Command Line Tools are installing, please rerun when it finishes.
xcode-select: note: install requested for command line developer tools
[brain_mac:~] smartlab% afni_system_check.py -check_all
-------------------------------- general ---------------------------------
architecture: 64bit
system: Darwin
release: 15.3.0
version: Darwin Kernel Version 15.3.0: Thu Dec 10 18:40:58 PST 2015; root:xnu-3248.30.4~1/RELEASE_X86_64
distribution: 10.11.3 x86_64
number of CPUs: 8
apparent login shell: tcsh

--------------------- AFNI and related program tests ---------------------
which afni : /Users/smartlab/abin/afni
afni version : Precompiled binary macosx_10.7_Intel_64: Dec 22 2015
which python : /usr/bin/python
python version : 2.7.10
which R : /usr/local/bin/R
R version : R version 3.4.2 (2017-09-28) -- "Short Summer"
which tcsh : /bin/tcsh

instances of various programs found in PATH:
afni : 1 (/Users/smartlab/abin/afni)
R : 1 (/Library/Frameworks/R.framework/Versions/3.4/Resources/bin/R)
python : 1 (/usr/bin/python)

testing ability to start various programs...
afni : success
suma : FAILURE
dyld: Library not loaded: /sw/lib/libglib-2.0.0.dylib
Referenced from: /Users/smartlab/abin/suma
Reason: image not found
3dSkullStrip : FAILURE
dyld: Library not loaded: /sw/lib/libglib-2.0.0.dylib
Referenced from: /Users/smartlab/abin/3dSkullStrip
Reason: image not found
uber_subject.py : success
3dAllineate : FAILURE
dyld: Library not loaded: /usr/local/lib/libgomp.1.dylib
Referenced from: /Users/smartlab/abin/3dAllineate
Reason: image not found
3dRSFC : success
SurfMesh : FAILURE
dyld: Library not loaded: /sw/lib/libglib-2.0.0.dylib
Referenced from: /Users/smartlab/abin/SurfMesh
Reason: image not found

checking for R packages...
rPkgsInstall -pkgs ALL -check : FAILURE

oo Warning:
These packages are not installed on the computer: afex!
These packages are not installed on the computer: phia!
These packages are not installed on the computer: snow!
These packages are not installed on the computer: lme4!
These packages are not installed on the computer: paran!
These packages are not installed on the computer: psych!


checking for $HOME files...
.afnirc : missing
.sumarc : missing
.afni/help/all_progs.COMP : found

------------------------------ python libs -------------------------------
---------------------------------------------------------
** python module not found: PyQt4

-> please see the output of "uber_subject.py -help_install"


-------------------------------- env vars --------------------------------
PATH = /Library/Frameworks/Python.framework/Versions/3.7/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/opt/X11/bin:/Users/smartlab/abin

PYTHONPATH =
R_LIBS =
LD_LIBRARY_PATH =
DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH =

------------------------------ data checks -------------------------------
data dir : missing AFNI_data6
data dir : missing suma_demo
data dir : missing FATCAT_DEMO
atlas : found TT_N27+tlrc under ./

------------------------------ OS specific -------------------------------

---------------------------- general comments ----------------------------
* consider copying AFNI.afnirc to ~/.afnirc
* consider running "suma -update_env" for .sumarc