Thanks Rick!
But this is true even if the volume is from another run?
Then I can keep my current set-up which is first preforming a localizer task where the EPIs are volreged to the min outlier and then the anatomy is aligned to that epi volume. Then you draw a ROI of your choice on the anatomical . Then during the real time feedback run the EPIs are aligned to the minimum outlier epi of the localizer scan so that the ROI matches the same anatomical structure as you drew the ROI on. Motion effects on the real time BOLD are taken care of with 3dDeconvolve -x1D stop and 3dTproject using the motion regressors. Thanks, now I don't have to worry!
Edited 1 time(s). Last edit at 11/10/2017 10:09AM by Robin.
