The shadow? I'm sure the shadow knows...
Getting analysis scripts to be BIDSian is certainly a big step. The visualization / GUI aspects though are another. Certainly the "All Datasets" view is a massive help here and is really the only thing that makes it possible right now. AFNI expects a flat directory structure at the level of a subject and "All Datasets" lets you unflatten break that assumption. I guess what I'm wondering is if it's worth putting in a BIDS-mode that, on startup would take the root BIDS directory, a subject, and a session as the startup parameters in the typical BIDS-ian fashion and then load all directories as if they were flat (instead of taking a subject directory). My function works a bit like this, leveraging off of 'find', but my guess is it could be done better.
Craig
