afni.nimh.nih.gov

Hi AFNI experts,

I want to use 3dLSS after using afni_proc.py. Is there a way to do this directly through afni_proc or how can I edit the 3dDeconvolve generated by afni_proc.py to be able to use 3dLSS afterwards? The following is generated by afni_proc.py. Thank you so much!

3dDeconvolve -input pb04.$subj.r*.scale+orig.HEAD \
-censor censor_${subj}_combined_2.1D \
-polort 3 -float \
-local_times \
-num_stimts 38 \
-stim_times_IM 1 \
stimuli/sub-01_task-turntest_animal-foil-DP-left-gold.txt 'BLOCK(1,1)' \
-stim_label 1 ani_fo_DP_lf_go \
-stim_times_IM 2 \
stimuli/sub-01_task-turntest_animal-foil-DP-left-silver.txt 'BLOCK(1,1)' \
-stim_label 2 ani_fo_DP_lf_sl \
-stim_times_IM 3 \
stimuli/sub-01_task-turntest_animal-foil-DP-right-gold.txt 'BLOCK(1,1)' \
-stim_label 3 ani_fo_DP_rg_go \
-stim_times_IM 4 \
stimuli/sub-01_task-turntest_animal-foil-DP-right-silver.txt 'BLOCK(1,1)' \
-stim_label 4 ani_fo_DP_rg_sl \
-stim_times_IM 5 \
stimuli/sub-01_task-turntest_animal-foil-NDP-left-gold.txt 'BLOCK(1,1)' \
-stim_label 5 ani_fo_NDP_lf_go \
-stim_times_IM 6 \
stimuli/sub-01_task-turntest_animal-foil-NDP-left-silver.txt 'BLOCK(1,1)' \
-stim_label 6 ani_fo_NDP_lf_sl \
-stim_times_IM 7 \
stimuli/sub-01_task-turntest_animal-foil-NDP-right-gold.txt 'BLOCK(1,1)' \
-stim_label 7 ani_fo_NDP_rg_go \
-stim_times_IM 8 \
stimuli/sub-01_task-turntest_animal-foil-NDP-right-silver.txt \
'BLOCK(1,1)' \
-stim_label 8 ani_fo_NDP_rg_sl \
-stim_times_IM 9 \
stimuli/sub-01_task-turntest_animal-target-DP-left-gold.txt 'BLOCK(1,1)' \
-stim_label 9 ani_ta_DP_lf_go \
-stim_times_IM 10 \
stimuli/sub-01_task-turntest_animal-target-DP-left-silver.txt \
'BLOCK(1,1)' \
-stim_label 10 ani_ta_DP_lf_sl \
-stim_times_IM 11 \
stimuli/sub-01_task-turntest_animal-target-DP-right-gold.txt 'BLOCK(1,1)' \
-stim_label 11 ani_ta_DP_rg_go \
-stim_times_IM 12 \
stimuli/sub-01_task-turntest_animal-target-DP-right-silver.txt \
'BLOCK(1,1)' \
-stim_label 12 ani_ta_DP_rg_sl \
-stim_times_IM 13 \
stimuli/sub-01_task-turntest_animal-target-NDP-left-gold.txt 'BLOCK(1,1)' \
-stim_label 13 ani_ta_NDP_lf_go \
-stim_times_IM 14 \
stimuli/sub-01_task-turntest_animal-target-NDP-left-silver.txt \
'BLOCK(1,1)' \
-stim_label 14 ani_ta_NDP_lf_sl \
-stim_times_IM 15 \
stimuli/sub-01_task-turntest_animal-target-NDP-right-gold.txt \
'BLOCK(1,1)' \
-stim_label 15 ani_ta_NDP_rg_go \
-stim_times_IM 16 \
stimuli/sub-01_task-turntest_animal-target-NDP-right-silver.txt \
'BLOCK(1,1)' \
-stim_label 16 ani_ta_NDP_rg_sl \
-stim_times_IM 17 \
stimuli/sub-01_task-turntest_vehicle-foil-DP-left-gold.txt 'BLOCK(1,1)' \
-stim_label 17 veh_fo_DP_lf_go \
-stim_times_IM 18 \
stimuli/sub-01_task-turntest_vehicle-foil-DP-left-silver.txt 'BLOCK(1,1)' \
-stim_label 18 veh_fo_DP_lf_sl \
-stim_times_IM 19 \
stimuli/sub-01_task-turntest_vehicle-foil-DP-right-gold.txt 'BLOCK(1,1)' \
-stim_label 19 veh_fo_DP_rg_go \
-stim_times_IM 20 \
stimuli/sub-01_task-turntest_vehicle-foil-DP-right-silver.txt \
'BLOCK(1,1)' \
-stim_label 20 veh_fo_DP_rg_sl \
-stim_times_IM 21 \
stimuli/sub-01_task-turntest_vehicle-foil-NDP-left-gold.txt 'BLOCK(1,1)' \
-stim_label 21 veh_fo_NDP_lf_go \
-stim_times_IM 22 \
stimuli/sub-01_task-turntest_vehicle-foil-NDP-left-silver.txt \
'BLOCK(1,1)' \
-stim_label 22 veh_fo_NDP_lf_sl \
-stim_times_IM 23 \
stimuli/sub-01_task-turntest_vehicle-foil-NDP-right-gold.txt 'BLOCK(1,1)' \
-stim_label 23 veh_fo_NDP_rg_go \
-stim_times_IM 24 \
stimuli/sub-01_task-turntest_vehicle-foil-NDP-right-silver.txt \
'BLOCK(1,1)' \
-stim_label 24 veh_fo_NDP_rg_sl \
-stim_times_IM 25 \
stimuli/sub-01_task-turntest_vehicle-target-DP-left-gold.txt 'BLOCK(1,1)' \
-stim_label 25 veh_ta_DP_lf_go \
-stim_times_IM 26 \
stimuli/sub-01_task-turntest_vehicle-target-DP-left-silver.txt \
'BLOCK(1,1)' \
-stim_label 26 veh_ta_DP_lf_sl \
-stim_times_IM 27 \
stimuli/sub-01_task-turntest_vehicle-target-DP-right-gold.txt \
'BLOCK(1,1)' \
-stim_label 27 veh_ta_DP_rg_go \
-stim_times_IM 28 \
stimuli/sub-01_task-turntest_vehicle-target-DP-right-silver.txt \
'BLOCK(1,1)' \
-stim_label 28 veh_ta_DP_rg_sl \
-stim_times_IM 29 \
stimuli/sub-01_task-turntest_vehicle-target-NDP-left-gold.txt \
'BLOCK(1,1)' \
-stim_label 29 veh_ta_NDP_lf_go \
-stim_times_IM 30 \
stimuli/sub-01_task-turntest_vehicle-target-NDP-left-silver.txt \
'BLOCK(1,1)' \
-stim_label 30 veh_ta_NDP_lf_sl \
-stim_times_IM 31 \
stimuli/sub-01_task-turntest_vehicle-target-NDP-right-gold.txt \
'BLOCK(1,1)' \
-stim_label 31 veh_ta_NDP_rg_go \
-stim_times_IM 32 \
stimuli/sub-01_task-turntest_vehicle-target-NDP-right-silver.txt \
'BLOCK(1,1)' \
-stim_label 32 veh_ta_NDP_rg_sl \
-stim_file 33 motion_demean.1D'[0]' -stim_base 33 -stim_label 33 roll \
-stim_file 34 motion_demean.1D'[1]' -stim_base 34 -stim_label 34 pitch \
-stim_file 35 motion_demean.1D'[2]' -stim_base 35 -stim_label 35 yaw \
-stim_file 36 motion_demean.1D'[3]' -stim_base 36 -stim_label 36 dS \
-stim_file 37 motion_demean.1D'[4]' -stim_base 37 -stim_label 37 dL \
-stim_file 38 motion_demean.1D'[5]' -stim_base 38 -stim_label 38 dP \
-fout \
-tout \
-x1D X.xmat.1D \
-xjpeg X.jpg \
-x1D_uncensored X.nocensor.xmat.1D \
-fitts fitts.sub-01_task-turntest \
-cbucket sub-01_task-turntest_beta \
-bucket sub-01_task-turntest_stats \
-fout -tout -x1D X.xmat.1D -xjpeg X.jpg \
-x1D_uncensored X.nocensor.xmat.1D \
-fitts fitts.$subj \
-errts errts.${subj} \
-cbucket all_betas.$subj \
-bucket stats.$subj