AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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December 13, 2017 10:33PM
Hi, every AFNI expert

In generally, resting-state BOLD signal range in 0.01-0.1. But when I see afni_proc.py newest example 11b for resting state, I notice there is no bandpass anymore. Why is that? Can I band pass later when I finish example 11b?

In case of reminding others who are also interesting in this question, I copy the example 11b from afni_proc.py

afni_proc.py -subj_id FT.11b.rest \
-blocks despike tshift align tlrc volreg blur mask regress \
-copy_anat FT_anat+orig \
-dsets FT_epi_r?+orig.HEAD \
-tcat_remove_first_trs 2 \
-align_opts_aea -cost lpc+ZZ \
-tlrc_base TT_N27+tlrc \
-tlrc_NL_warp \
-volreg_align_to MIN_OUTLIER \
-volreg_align_e2a \
-volreg_tlrc_warp \
-volreg_warp_dxyz 2.5 \
-mask_segment_anat yes \
-mask_segment_erode yes \
-mask_import Tvent template_ventricle_2.5mm+tlrc \
-mask_intersect Svent CSFe Tvent \
-regress_motion_per_run \
-regress_ROI_PC Svent 3 \
-regress_ROI_PC_per_run Svent \
-regress_make_corr_vols WMe Svent \
-regress_anaticor_fast \
-regress_censor_motion 0.2 \
-regress_censor_outliers 0.1 \
-regress_apply_mot_types demean deriv \
-regress_est_blur_epits \
-regress_est_blur_errts \
-regress_run_clustsim yes
Subject Author Posted

Bandpass in anfi_proc.py

hjr61547 December 13, 2017 10:33PM

Re: Bandpass in anfi_proc.py

rick reynolds December 20, 2017 10:05AM