AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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insularcortex
February 15, 2018 03:24PM
Dear staff of afni,

I was trying to use uber_subject.py to analyze tasked-based (block-design) fMRI data.

The data has for example, have 3 runs and have 4 stimulus types, and thus 4 stimulus timing files.

In each timing file, there should be 3 rows to represent the 3 runs.


However, for example, the second run only have 3 stimulus types, then for the timing file, there would be only 2 rows:
0 100 200 300

0 100 200 300

If I put the 2-row timing file into uber_subject.py, a warning will show up:

2 rows does not match 3 runs.

Is that OK?
How am I able to specify a empty row (leave the row blank or put a space there)?

Thanks!

Thanks. I have already found the instruction, put a * on the row.



Edited 2 time(s). Last edit at 02/15/2018 03:39PM by insularcortex.
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Subject Author Posted

uber_subject.py stimulus timing files, rows does't match runs

insularcortex February 15, 2018 03:24PM

Re: uber_subject.py stimulus timing files, rows does't match runs

insularcortex February 15, 2018 03:38PM