AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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April 05, 2018 07:46AM
Dear developers and advanced users,
I'm using Precompiled binary linux_openmp_64: Mar 7 2018 AFNI_18.0.25 in CentOS 6.9, bash shell and I get the following problem trying to use afni-suma talk using the following steps from page: [afni.nimh.nih.gov]
in detail:
# port for AFNI-SUMA communications, and end all other chatter on it
export cport = 12
@Quiet_Talkers -npb_val $cport

# set line thickness of SUMA surfaces sent to AFNI:
export AFNI_SUMA_LINESIZE 0.005

# Open talkable AFNI
afni -npb $cport -niml -yesplugouts &

# Choose ulay (anat) and olay (FA>0.2) in AFNI
plugout_drive \
-npb $cport \
-com 'SWITCH_UNDERLAY imit2w.nii' \
-com 'SWITCH_OVERLAY dt_FA.nii.gz' \
-com "SEE_OVERLAY +" \
-com "SET_PBAR_ALL +99 1.0 Plasma" \
-com 'SET_THRESHNEW 0.2' \
-v \
-quit
++ AFNI control channel tcp:localhost:1321 created
++ AFNI control channel connected
++ Sending control information to AFNI
PONAME plugout_drive
IOCHAN tcp:localhost:1328
PO: plugout connection from host 127.0.0.1 (tcp:*:1321)
++ AFNI data channel created
++ AFNI data channel is open
Command String 0 Echo: 'DRIVE_AFNI SWITCH_UNDERLAY imit2w.nii'
PO: plugout connection name is plugout_drive
++ AFNI response string: OK!
Command String 1 Echo: 'DRIVE_AFNI SWITCH_OVERLAY dt_FA.nii.gz'
++ AFNI response string: OK!
Command String 2 Echo: 'DRIVE_AFNI SEE_OVERLAY +'
++ AFNI response string: OK!
Command String 3 Echo: 'DRIVE_AFNI SET_PBAR_ALL +99 1.0 Plasma'
++ AFNI response string: OK!
Command String 4 Echo: 'DRIVE_AFNI SET_THRESHNEW 0.2'
++ AFNI response string: OK!
Command String 5 Echo: 'DRIVE_AFNI SWITCH_OVERLAY dt_FA.nii.gz'
++ AFNI response string: OK!
Command String 6 Echo: 'DRIVE_AFNI SEE_OVERLAY +'
++ AFNI response string: OK!
Command String 7 Echo: 'DRIVE_AFNI SET_PBAR_ALL +99 1.0 Plasma'
++ AFNI response string: OK!
Command String 8 Echo: 'DRIVE_AFNI SET_THRESHNEW 0.2'
++ AFNI response string: OK!
[gc@lugh gc_DIFFPREP11]$ PO: plugout 'plugout_drive' has broken connection!
: iochan_goodcheck: no longer alive

apparently the AFNI output is fine but the connection is broken.
Any suggestion?
Cheers,
Giuseppe
Subject Author Posted

plugout_drive broken connection: iochan_goodcheck: no longer alive

giuseppe.cabras@uniud.it April 05, 2018 07:46AM

Re: plugout_drive broken connection: iochan_goodcheck: no longer alive

Daniel Glen April 05, 2018 04:04PM