AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
May 01, 2018 03:59PM
I'm trying to run @auto_tlrc on resting state data, using
@auto_tlrc -base TT_N27+tlrc -input ${Subject}_MPRAGE+orig -no_ss -OK_maxite

I've also tried without the -OK_maxite option. Sometimes the command works and other times it fails, and I can't figure out why.

I get *** ERROR: failed (35) to open file ./__ats_tmp___upad40_S38_MPRAGE+tlrc.HEAD for attribute writing;
- Do you have permission to write to this disk?
- Is the disk full?

Here is a longer version of the some of the output.
Warping has converged.

++ 3dcopy: AFNI version=AFNI_18.1.09 (Apr 30 2018) [64-bit]
++ 3dWarp: AFNI version=AFNI_18.1.09 (Apr 30 2018) [64-bit]
++ Authored by: RW Cox
Applying brain mask
++ 3dcalc: AFNI version=AFNI_18.1.09 (Apr 30 2018) [64-bit]
++ Authored by: A cast of thousands
++ Output dataset ././__ats_tmp__reg_braintlrcstep+orig.BRIK
++ 3dWarp: AFNI version=AFNI_18.1.09 (Apr 30 2018) [64-bit]
++ Authored by: RW Cox
++ 3drename: AFNI version=AFNI_18.1.09 (Apr 30 2018) [64-bit]
++ THD_rename_dataset_files: rename __ats_tmp___pad40_S38_MPRAGE+orig.HEAD -> __ats_tmp___pad40_S38_MPRAGE.skl+orig.HEAD
++ THD_rename_dataset_files: rename __ats_tmp___pad40_S38_MPRAGE+orig.BRIK -> __ats_tmp___pad40_S38_MPRAGE.skl+orig.BRIK
++ 3dcalc: AFNI version=AFNI_18.1.09 (Apr 30 2018) [64-bit]
++ Authored by: A cast of thousands
++ Output dataset ././__ats_tmp___pad40_S38_MPRAGE+orig.BRIK
Unpadding ...
++ 3dZeropad: AFNI version=AFNI_18.1.09 (Apr 30 2018) [64-bit]
++ output dataset: ./__ats_tmp___upad40_S38_MPRAGE+orig.BRIK
++ 3drefit: AFNI version=AFNI_18.1.09 (Apr 30 2018) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset __ats_tmp___upad40_S38_MPRAGE+orig
*+ WARNING: Changing the space of an ORIG view dataset may cause confusion!
*+ WARNING: NIFTI copies will be interpreted as TLRC view (not TLRC space).
*+ WARNING: Consider changing the view of the dataset to TLRC view also
++ 3drefit processed 1 datasets
Changing view of transformed anatomy
++ 3drefit: AFNI version=AFNI_18.1.09 (Apr 30 2018) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset __ats_tmp___upad40_S38_MPRAGE+orig.HEAD
+ changing dataset view code
+ Changed dataset view type and filenames.
*** ERROR: failed (35) to open file ./__ats_tmp___upad40_S38_MPRAGE+tlrc.HEAD for attribute writing;
- Do you have permission to write to this disk?
- Is the disk full?
*** Datablock write error: failure to write attributes - is disk full? do you have write permission?
++ 3drefit processed 1 datasets
Setting parent with 3drefit -wset S38_MPRAGE+orig __ats_tmp___upad40_S38_MPRAGE+tlrc
++ 3drefit: AFNI version=AFNI_18.1.09 (Apr 30 2018) [64-bit]
++ Authored by: RW Cox

*** DATASET error: have no warp but have no data on disk as well
PURGING dataset ./__ats_tmp___upad40_S38_MPRAGE+orig.HEAD from memory
** ERROR: Can't open dataset __ats_tmp___upad40_S38_MPRAGE+tlrc
++ 3drefit processed 0 datasets
++ 3drename: AFNI version=AFNI_18.1.09 (Apr 30 2018) [64-bit]
++ Warning: ignoring +tlrc on new_prefix.
++ THD_rename_dataset_files: rename __ats_tmp___upad40_S38_MPRAGE+tlrc.HEAD -> S38_MPRAGE+tlrc.HEAD
++ THD_rename_dataset_files: rename __ats_tmp___upad40_S38_MPRAGE+tlrc.BRIK -> S38_MPRAGE+tlrc.BRIK
Cleanup ...
auto_tlrc completed
Subject Author Posted

@auto_tlrc

krisknut May 01, 2018 03:59PM

Re: @auto_tlrc

krisknut May 03, 2018 02:05PM