AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

Previous Message Next Message
Message List New Topic Print View
|
ptaylor
May 10, 2018 07:48AM
A recently-submitted bioRxiv draft (not by AFNI authors) described "default FMRI processing" using various softwares, including AFNI. In further dialogue with this work, we comment on many of the steps chosen therein with AFNI, and provide several recommendations in the forms of both code snippets and philosophical musings. The AFNI draft is located on bioRxiv:
[www.biorxiv.org]

There are also some of the associated codes are located here:
[afni.nimh.nih.gov]
(Please note that while some those codes do contain fixes from the other paper and recommended steps in analyzing FMRI data, there are still several cases where things we would *not* recommend were left in the codes, for the purposes of comparison with the other authors' text; please refer to our bioRxiv comments for details.)

Glancing through the AFNI draft might be useful, as it discusses several points related to FMRI processing in general and with afni_proc.py in particular.

--pt
Reply Quote
RSS
Subject Author Posted

Discussion points of FMRI processing with AFNI

ptaylor May 10, 2018 07:48AM

Re: Discussion points of FMRI processing with AFNI

Daniel Glen October 02, 2018 02:02PM