AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 20, 2020 03:09PM
Dear all,

I would like to use @stim_analyze or @stim_analyze_modern to iteratively create & evaluate (via 3dDeconvolve -nodata) random event-related timing parameters in order to maximize efficiency & power of our design. I have 2 questions -- 1) what are the differences between the two scripts? Am I correct to think the only differences are in the make_random_timing.py arguments, with the _modern version taking advantage of the timing classes functionality? and 2) in our experiments we use a MION contrast agent that significantly alters the HRF by lengthening time to return to baseline (recovery is on the order of 30-40, rather than 10-20 seconds). How can I incorporate this aspect of the response function into the pipeline?

thanks much.
best,
Geena
Subject Author Posted

@stim_analyze & modern version

geenaianni January 20, 2020 03:09PM

Re: @stim_analyze & modern version

rick reynolds January 21, 2020 02:24PM

Re: @stim_analyze & modern version

geenaianni January 24, 2020 04:13PM

Re: @stim_analyze & modern version

rick reynolds January 27, 2020 10:54AM

Re: @stim_analyze & modern version

rick reynolds January 27, 2020 01:34PM

Re: @stim_analyze & modern version

geenaianni January 27, 2020 03:54PM

Re: @stim_analyze & modern version

rick reynolds January 28, 2020 09:29AM