AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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May 18, 2018 02:21PM
They are the smallest and largest t-statistics found in each iteration of the randomization.

In turn, they are used to compute the 'XX.5percent.txt' output file, which is the threshold to use for voxelwise thresholding at the 5 percent (and other percentiles) global FPR level. This threshold is usually pretty strict, which is why clusterwise thresholding was invented in the first place. Due to spatial correlation (if blurring was used somewhere in the analysis), the Bonferroni correction by the number of voxels is usually WAY too strict. That is, taking the p-value voxelwise threshold to be 0.05/number-of-brain-voxels is overly conservative if spatial blurring were used. The XX.5percent.txt file gives the voxelwise t-threshold to use in that case -- this calculation is a side-benefit of the simulations needed for the cluster threshold calculations, and it is output at the request of the statistician-who-cannot-be-named.
Subject Author Posted

ETAC min/max output 1D files?

DannyS May 18, 2018 12:59PM

Re: ETAC min/max output 1D files?

RWCox May 18, 2018 02:21PM

Re: ETAC min/max output 1D files?

DannyS May 18, 2018 11:40PM