AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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May 23, 2018 03:35PM
With your current model specification:

> -model 'Ext_t*ageatvisit*correct+reward+meanmotion' \

do you really want the interaction between Ext_t and ageatvisit? Such an interaction can be modeled, but it would be a little tricky to set it up. I would start with a simpler model:

> -model 'correct*reward+Ext_t+ageatvisit+meanmotion' \

Unless you have missing data, it would be better to use 3dMVM by replacing

3dLME -overwrite -prefix ../ncanda_scripts/ncanda_3dlme_output/3dlme_output_extxagexcor_continuous.nii.gz \
-mask gm_50mask+tlrc \
-model 'Ext_t*ageatvisit*correct+reward+meanmotion' \
-qVars "Ext_t,ageatvisit,meanmotion" \
-ranEff '~1' \
-jobs 8 \
-SS_type 3 \

with

3dMVM -overwrite -prefix ../ncanda_scripts/ncanda_3dlme_output/3dlme_output_extxagexcor_continuous.nii.gz \
-mask gm_50mask+tlrc \
-bwVars 'Ext_t+ageatvisit+meanmotion' \
-wsVars 'correct*reward' \
-qVars "Ext_t,ageatvisit,meanmotion" \
-jobs 8 \

Also, do those three quantitative variables (ageatvisit, ext_t, meanmotion) differ substantially across the levels of those two within-subject factors?

Gang



Edited 1 time(s). Last edit at 05/29/2018 02:47PM by Gang.
Subject Author Posted

3dlme model test fail

alq6 May 21, 2018 02:18PM

Re: 3dlme model test fail

gang May 21, 2018 04:21PM

Re: 3dlme model test fail

alq6 May 23, 2018 09:59AM

Re: 3dlme model test fail

gang May 23, 2018 03:35PM

Re: 3dlme model test fail

alq6 May 29, 2018 02:41PM

Re: 3dlme model test fail

gang May 30, 2018 05:30PM