AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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June 05, 2018 05:01AM
This reply helps a lot. My query is (which might be silly), since you said:

"""
- Such a cluster table is produced by 3dttest++ -Clustsim,
though it is up to you to apply the threshold/cluster step
(it does not assume which p-values to apply).

- The thresholding and clustering is applied to a t-stat or
z-score volume. The mean volume would probably be used for
colorization, showing the effect size.
"""

I got multiple tables after running 3dttest++ -Clustsim on 20*2 subjects, how do you proceed from there i.e. how do I apply thresholding and clustering now on z-score maps for each subject? I don't know how to interpret the results. If I open AFNI, select some p-value and cluster-size value, I get a Report which says peak-x, peak-y, peak-z values which again I don't how to interpret. Any help or direction is appreciated.
Subject Author Posted

3dttest++ on resting state data for clusters extraction

Doughboys May 29, 2018 10:40AM

Re: 3dttest++ on resting state data for clusters extraction

rick reynolds June 04, 2018 03:32PM

Re: 3dttest++ on resting state data for clusters extraction

umeshksingla June 05, 2018 05:01AM

Re: 3dttest++ on resting state data for clusters extraction

rick reynolds June 05, 2018 04:41PM

Re: 3dttest++ on resting state data for clusters extraction

Doughboys June 07, 2018 08:34AM