AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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bfuchs
June 12, 2018 03:43PM
Hi, thanks for your reply and for the example. We originally had the other components but had left out the 'anat_has_skull no' option. Once we added that to the afni_proc.py script we were able to run the generated script without errors. When we added that option, it removed the following lines from the subject proc script which seemed to be causing the error.

# warp anat follower datasets (affine)
# catenate all transformations
cat_matvec -ONELINE
\
anatQQ.101A_WARP.nii.gz
\
3dAllineate -source anatSS.101A+orig
anatQQ.101A.aff12.1D > warp.all.anat.aff12.1D
\ \ \
-master anat_final.$subj+tlrc
-final wsinc5 -1Dmatrix_apply warp.all.anat.aff12.1D
-prefix anat_w_skull_warped

Thanks again!
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cat_matvec error during volreg with SSwarper output Attachments

bfuchs June 12, 2018 12:20PM

Re: cat_matvec error during volreg with SSwarper output

ptaylor June 12, 2018 12:48PM

Re: cat_matvec error during volreg with SSwarper output

ptaylor June 12, 2018 01:01PM

Re: cat_matvec error during volreg with SSwarper output

bfuchs June 12, 2018 03:43PM

Re: cat_matvec error during volreg with SSwarper output

rick reynolds June 12, 2018 01:02PM

Re: cat_matvec error during volreg with SSwarper output

bfuchs June 12, 2018 03:47PM