History of AFNI updates  

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June 15, 2018 11:03AM
Hi, Mengxing-

Well, you can use 3dClusterize to threshold more easily than with 3dmerge/3dclust, probably:
[afni.nimh.nih.gov]
There, you can use either voxelwise p or statistic value, along with cluster volume. For a code example using it on an actual dataset with 3dClustSim and , you can see here:
[afni.nimh.nih.gov]

I haven't looked at using this *specifically* with 3dFDR output or whatever you are using, but it should be an easier place to start than 3dclust/3dmerge.

--pt
Subject Author Posted

threshold by p or q, instead of t/F value by 3dclust/3dmerge

Liu Mengxing June 15, 2018 05:41AM

Re: threshold by p or q, instead of t/F value by 3dclust/3dmerge

ptaylor June 15, 2018 11:03AM

Re: threshold by p or q, instead of t/F value by 3dclust/3dmerge

Liu Mengxing June 16, 2018 10:14AM

Re: threshold by p or q, instead of t/F value by 3dclust/3dmerge

ptaylor June 16, 2018 05:15PM

Re: threshold by p or q, instead of t/F value by 3dclust/3dmerge

Liu Mengxing June 16, 2018 06:08PM

Re: threshold by p or q, instead of t/F value by 3dclust/3dmerge

ptaylor June 17, 2018 05:44PM