AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

Previous Message Next Message
Message List New Topic Print View
|
xiangyang
June 21, 2018 02:29PM
I want to map the" ts_normalized" surf_file to the AFNI volume domain(group level), however, the brick datasets in the generated "lh/rh_ts_normalized_sb_tlrc" file don't have same number of volumes with the original "ts_normalized_tlrc" file.
Why?

foreach infile(ts_normalized)
foreach hemi (lh rh)
3dSurf2Vol \
-spec $spath/group/freesurfer/SUMA/subAvg_"$hemi"+tlrc.spec \
-surf_A smoothwm \
-surf_B pial \
-sv $spath/group/subAvg_SurfVol_at+tlrc.nii.gz \
-grid_parent "$spath"/"$sub"/"$infile"_at+tlrc.nii.gz \
-sdata_1D "$hemi"_"$infile".1D \
-datum float \
-map_func max_abs \
-f_steps 15 \
-f_index voxels \
-f_p1_fr -0.2 -f_pn_fr 0.4 \
-prefix ./"$hemi"_"$infile"_sb
end
Reply Quote
RSS
Subject Author Posted

3dSurf2Vol

xiangyang June 21, 2018 02:29PM

Re: 3dSurf2Vol

ptaylor June 25, 2018 05:07PM