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Dear AFNI users-

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Sincerely, AFNI HQ

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charujing123
July 04, 2018 03:05AM
I have performed the resting state analysis. this is my script:
====
afni_proc.py -subj_id CON_EIU24 \
-blocks despike tshift align tlrc volreg blur mask regress \
-copy_anat CON_EIU24_SurfVol.nii \
-anat_follower_ROI aaseg anat aparc.a2009s+aseg.nii \
-anat_follower_ROI aeseg epi aparc.a2009s+aseg.nii \
-anat_follower_ROI FSvent epi aparc.a2009s+aseg_REN_vent.nii.gz \
-anat_follower_ROI FSWe epi aparc.a2009s+aseg_REN_wmat.nii.gz \
-anat_follower_erode FSvent FSWe \
-dsets $currpath/rest+orig.HEAD \
-tcat_remove_first_trs 2 \
-align_opts_aea -cost lpc+ZZ \
-tlrc_base MNI_caez_N27+tlrc \
-tlrc_NL_warp \
-volreg_align_to MIN_OUTLIER \
-volreg_align_e2a \
-volreg_tlrc_warp \
-regress_motion_per_run \
-regress_ROI_PC FSvent 3 \
-regress_make_corr_vols aeseg FSvent \
-regress_anaticor_fast \
-regress_anaticor_label FSWe \
-regress_censor_motion 0.2 \
-regress_censor_outliers 0.1 \
-regress_apply_mot_types demean deriv \
-regress_est_blur_epits \
-regress_est_blur_errts
====
I found several results: errts.CON_EIU24.fanaticor+tlrc; errts.CON_EIU24.tproject+tlrc; all_runs.CON_EIU24+tlrc;
So which one I can use to perform functional connectivity?
Thanks.



Edited 1 time(s). Last edit at 07/04/2018 03:05AM by charujing123.
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Subject Author Posted

output of afni_proc.py in resting-state

charujing123 July 04, 2018 03:05AM

Re: output of afni_proc.py in resting-state

Peter Molfese July 05, 2018 09:56AM

Re: output of afni_proc.py in resting-state Attachments

charujing123 July 07, 2018 02:49AM

Re: output of afni_proc.py in resting-state

rick reynolds July 08, 2018 09:05AM