Hello,

Everything you show there is just a warning, most are
expected or at least okay ("okay" is the one about the
data being already aligned in time - I guess that EPI
is missing its slice timing information).

However the one that says the data centers are 42+ mm
suggests one of your datasets does not have accurate
coordinates. It might help to show the output of 3dinfo
on both the anat and EPI.

It seems likely that you would want to run @Align_Centers
on one or both datasets, before running afni_proc.py.

Also, consider applying the option set:

-align_opts_aea -cost lpc+ZZ -giant_move

- rick