Hi, Tamara-
Yep, those visual QC steps all look good.
From the point of view of checking how the nonlinear alignment aspect worked, you would also want to check that the sulcal+gyral patterns between the olay and ulay line up, as well as things like tissue boundaries. (Note that in the medial-sagittal slices, like where the slice=1L, one can indeed expect to see "sheets" of outlines, like in the present olay, since one might have the edge of a hemisphere throughout a slice. That looks normal, too.) Most of those patterns look pretty well lined up. One thing to check-- how do the ventricles line up? Are the subject's (ulay volume's) ventricles fairly large? I can't quite tell if the olay outline is of the CSF boundary, or just some contrast inside of it. That might be worth looking at in teh GUI with full ulay/olay.
--pt
